0.018657
0.004414
0.018414
0.000000
0.019190
0.008381
0.000000
0.000000
0.026394
0.00000
0.00000
0.00000
Bergmann, E.M.
James, M.N.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
99.08
129.00
103.31
53.600
53.550
53.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H7 N O5 S
169.156
n
CYSTEINESULFONIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Virol.
JOVIAM
0825
0022-538X
71
2436
2448
9032381
The refined crystal structure of the 3C gene product from hepatitis A virus: specific proteinase activity and RNA recognition.
1997
To be Published
0353
Hepatitis a Virus Picornain 3C
UK
Nature
NATUAS
0006
0028-0836
369
72
Picornaviral 3C Cysteine Proteinases Have a Fold Similar to Chymotrypsin-Like Serine Proteinases
1994
US
Biochemistry
BICHAW
0033
0006-2960
31
3358
Expression and Characterization of Recombinant Hepatitis a Virus 3C Proteinase
1992
10.2210/pdb1hav/pdb
pdb_00001hav
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
AREA DETECTOR
1994-10-30
XUONG-HAMLIN MULTIWIRE
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
23904.564
HEPATITIS A VIRUS 3C PROTEINASE
2.7.7.48
C24S
1
man
polymer
23952.562
HEPATITIS A VIRUS 3C PROTEINASE
2.7.7.48
C24S
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
107
nat
water
PICORNAIN 3C
PICORNAIN 3C
no
no
STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDV
GFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQA
WRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIE
STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDV
GFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQA
WRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIE
A
polypeptide(L)
no
yes
STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDV
GFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQA
WRGKGEGLPGM(OCS)GGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIE
STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDV
GFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQA
WRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIE
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Hepatovirus
Escherichia
sample
3C
12092
Hepatitis A virus
3C
562
Escherichia coli
PHAV-3CEX
Hepatovirus
Escherichia
sample
3C
12092
Hepatitis A virus
3C
562
Escherichia coli
PHAV-3CEX
1
2.21
44.36
8.5
pH 8.5
database_2
pdbx_database_status
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Derived calculations
Other
1
0
1996-12-23
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-10-23
REL
CL
CHLORIDE ION
HOH
water
ACTIVE SITE CYSTEINE 172 IS OXIDIZED IN MOLECULE B.
MOLECULE A RESEMBLES ACTIVE PROTEINASE.
CL
1
3
CL
CL
218
B
HOH
1
4
HOH
HOH
218
A
HOH
2
4
HOH
HOH
219
A
HOH
3
4
HOH
HOH
220
A
HOH
4
4
HOH
HOH
221
A
HOH
5
4
HOH
HOH
222
A
HOH
6
4
HOH
HOH
223
A
HOH
7
4
HOH
HOH
224
A
HOH
8
4
HOH
HOH
225
A
HOH
9
4
HOH
HOH
226
A
HOH
10
4
HOH
HOH
227
A
HOH
11
4
HOH
HOH
228
A
HOH
12
4
HOH
HOH
229
A
HOH
13
4
HOH
HOH
230
A
HOH
14
4
HOH
HOH
231
A
HOH
15
4
HOH
HOH
232
A
HOH
16
4
HOH
HOH
233
A
HOH
17
4
HOH
HOH
234
A
HOH
18
4
HOH
HOH
235
A
HOH
19
4
HOH
HOH
236
A
HOH
20
4
HOH
HOH
237
A
HOH
21
4
HOH
HOH
238
A
HOH
22
4
HOH
HOH
239
A
HOH
23
4
HOH
HOH
240
A
HOH
24
4
HOH
HOH
241
A
HOH
25
4
HOH
HOH
242
A
HOH
26
4
HOH
HOH
243
A
HOH
27
4
HOH
HOH
244
A
HOH
28
4
HOH
HOH
245
A
HOH
29
4
HOH
HOH
246
A
HOH
30
4
HOH
HOH
247
A
HOH
31
4
HOH
HOH
248
A
HOH
32
4
HOH
HOH
249
A
HOH
33
4
HOH
HOH
250
A
HOH
34
4
HOH
HOH
251
A
HOH
35
4
HOH
HOH
252
A
HOH
36
4
HOH
HOH
253
A
HOH
37
4
HOH
HOH
254
A
HOH
38
4
HOH
HOH
255
A
HOH
39
4
HOH
HOH
256
A
HOH
40
4
HOH
HOH
257
A
HOH
41
4
HOH
HOH
258
A
HOH
42
4
HOH
HOH
259
A
HOH
43
4
HOH
HOH
260
A
HOH
44
4
HOH
HOH
261
A
HOH
45
4
HOH
HOH
262
A
HOH
46
4
HOH
HOH
263
A
HOH
47
4
HOH
HOH
264
A
HOH
48
4
HOH
HOH
265
A
HOH
49
4
HOH
HOH
266
A
HOH
50
4
HOH
HOH
267
A
HOH
51
4
HOH
HOH
268
A
HOH
52
4
HOH
HOH
269
A
HOH
53
4
HOH
HOH
270
A
HOH
54
4
HOH
HOH
271
A
HOH
55
4
HOH
HOH
272
A
HOH
56
4
HOH
HOH
273
A
HOH
57
4
HOH
HOH
274
A
HOH
58
4
HOH
HOH
275
A
HOH
59
4
HOH
HOH
276
A
HOH
60
4
HOH
HOH
277
A
HOH
61
4
HOH
HOH
278
A
HOH
1
4
HOH
HOH
219
B
HOH
2
4
HOH
HOH
220
B
HOH
3
4
HOH
HOH
221
B
HOH
4
4
HOH
HOH
222
B
HOH
5
4
HOH
HOH
223
B
HOH
6
4
HOH
HOH
224
B
HOH
7
4
HOH
HOH
225
B
HOH
8
4
HOH
HOH
226
B
HOH
9
4
HOH
HOH
227
B
HOH
10
4
HOH
HOH
228
B
HOH
11
4
HOH
HOH
229
B
HOH
12
4
HOH
HOH
230
B
HOH
13
4
HOH
HOH
231
B
HOH
14
4
HOH
HOH
232
B
HOH
15
4
HOH
HOH
233
B
HOH
16
4
HOH
HOH
234
B
HOH
17
4
HOH
HOH
235
B
HOH
18
4
HOH
HOH
236
B
HOH
19
4
HOH
HOH
237
B
HOH
20
4
HOH
HOH
238
B
HOH
21
4
HOH
HOH
239
B
HOH
22
4
HOH
HOH
240
B
HOH
23
4
HOH
HOH
241
B
HOH
24
4
HOH
HOH
242
B
HOH
25
4
HOH
HOH
243
B
HOH
26
4
HOH
HOH
244
B
HOH
27
4
HOH
HOH
245
B
HOH
28
4
HOH
HOH
246
B
HOH
29
4
HOH
HOH
247
B
HOH
30
4
HOH
HOH
248
B
HOH
31
4
HOH
HOH
249
B
HOH
32
4
HOH
HOH
250
B
HOH
33
4
HOH
HOH
251
B
HOH
34
4
HOH
HOH
252
B
HOH
35
4
HOH
HOH
253
B
HOH
36
4
HOH
HOH
254
B
HOH
37
4
HOH
HOH
255
B
HOH
38
4
HOH
HOH
256
B
HOH
39
4
HOH
HOH
257
B
HOH
40
4
HOH
HOH
258
B
HOH
41
4
HOH
HOH
259
B
HOH
42
4
HOH
HOH
260
B
HOH
43
4
HOH
HOH
261
B
HOH
44
4
HOH
HOH
262
B
HOH
45
4
HOH
HOH
263
B
HOH
46
4
HOH
HOH
264
B
SER
1
n
1
SER
1
A
THR
2
n
2
THR
2
A
LEU
3
n
3
LEU
3
A
GLU
4
n
4
GLU
4
A
ILE
5
n
5
ILE
5
A
ALA
6
n
6
ALA
6
A
GLY
7
n
7
GLY
7
A
LEU
8
n
8
LEU
8
A
VAL
9
n
9
VAL
9
A
ARG
10
n
10
ARG
10
A
LYS
11
n
11
LYS
11
A
ASN
12
n
12
ASN
12
A
LEU
13
n
13
LEU
13
A
VAL
14
n
14
VAL
14
A
GLN
15
n
15
GLN
15
A
PHE
16
n
16
PHE
16
A
GLY
17
n
17
GLY
17
A
VAL
18
n
18
VAL
18
A
GLY
19
n
19
GLY
19
A
GLU
20
n
20
GLU
20
A
LYS
21
n
21
LYS
21
A
ASN
22
n
22
ASN
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
VAL
25
n
25
VAL
25
A
ARG
26
n
26
ARG
26
A
TRP
27
n
27
TRP
27
A
VAL
28
n
28
VAL
28
A
MET
29
n
29
MET
29
A
ASN
30
n
30
ASN
30
A
ALA
31
n
31
ALA
31
A
LEU
32
n
32
LEU
32
A
GLY
33
n
33
GLY
33
A
VAL
34
n
34
VAL
34
A
LYS
35
n
35
LYS
35
A
ASP
36
n
36
ASP
36
A
ASP
37
n
37
ASP
37
A
TRP
38
n
38
TRP
38
A
LEU
39
n
39
LEU
39
A
LEU
40
n
40
LEU
40
A
VAL
41
n
41
VAL
41
A
PRO
42
n
42
PRO
42
A
SER
43
n
43
SER
43
A
HIS
44
n
44
HIS
44
A
ALA
45
n
45
ALA
45
A
TYR
46
n
46
TYR
46
A
LYS
47
n
47
LYS
47
A
PHE
48
n
48
PHE
48
A
GLU
49
n
49
GLU
49
A
LYS
50
n
50
LYS
50
A
ASP
51
n
51
ASP
51
A
TYR
52
n
52
TYR
52
A
GLU
53
n
53
GLU
53
A
MET
54
n
54
MET
54
A
MET
55
n
55
MET
55
A
GLU
56
n
56
GLU
56
A
PHE
57
n
57
PHE
57
A
TYR
58
n
58
TYR
58
A
PHE
59
n
59
PHE
59
A
ASN
60
n
60
ASN
60
A
ARG
61
n
61
ARG
61
A
GLY
62
n
62
GLY
62
A
GLY
63
n
63
GLY
63
A
THR
64
n
64
THR
64
A
TYR
65
n
65
TYR
65
A
TYR
66
n
66
TYR
66
A
SER
67
n
67
SER
67
A
ILE
68
n
68
ILE
68
A
SER
69
n
69
SER
69
A
ALA
70
n
70
ALA
70
A
GLY
71
n
71
GLY
71
A
ASN
72
n
72
ASN
72
A
VAL
73
n
73
VAL
73
A
VAL
74
n
74
VAL
74
A
ILE
75
n
75
ILE
75
A
GLN
76
n
76
GLN
76
A
SER
77
n
77
SER
77
A
LEU
78
n
78
LEU
78
A
ASP
79
n
79
ASP
79
A
VAL
80
n
80
VAL
80
A
GLY
81
n
81
GLY
81
A
PHE
82
n
82
PHE
82
A
GLN
83
n
83
GLN
83
A
ASP
84
n
84
ASP
84
A
VAL
85
n
85
VAL
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
MET
88
n
88
MET
88
A
LYS
89
n
89
LYS
89
A
VAL
90
n
90
VAL
90
A
PRO
91
n
91
PRO
91
A
THR
92
n
92
THR
92
A
ILE
93
n
93
ILE
93
A
PRO
94
n
94
PRO
94
A
LYS
95
n
95
LYS
95
A
PHE
96
n
96
PHE
96
A
ARG
97
n
97
ARG
97
A
ASP
98
n
98
ASP
98
A
ILE
99
n
99
ILE
99
A
THR
100
n
100
THR
100
A
GLN
101
n
101
GLN
101
A
HIS
102
n
102
HIS
102
A
PHE
103
n
103
PHE
103
A
ILE
104
n
104
ILE
104
A
LYS
105
n
105
LYS
105
A
LYS
106
n
106
LYS
106
A
GLY
107
n
107
GLY
107
A
ASP
108
n
108
ASP
108
A
VAL
109
n
109
VAL
109
A
PRO
110
n
110
PRO
110
A
ARG
111
n
111
ARG
111
A
ALA
112
n
112
ALA
112
A
LEU
113
n
113
LEU
113
A
ASN
114
n
114
ASN
114
A
ARG
115
n
115
ARG
115
A
LEU
116
n
116
LEU
116
A
ALA
117
n
117
ALA
117
A
THR
118
n
118
THR
118
A
LEU
119
n
119
LEU
119
A
VAL
120
n
120
VAL
120
A
THR
121
n
121
THR
121
A
THR
122
n
122
THR
122
A
VAL
123
n
123
VAL
123
A
ASN
124
n
124
ASN
124
A
GLY
125
n
125
GLY
125
A
THR
126
n
126
THR
126
A
PRO
127
n
127
PRO
127
A
MET
128
n
128
MET
128
A
LEU
129
n
129
LEU
129
A
ILE
130
n
130
ILE
130
A
SER
131
n
131
SER
131
A
GLU
132
n
132
GLU
132
A
GLY
133
n
133
GLY
133
A
PRO
134
n
134
PRO
134
A
LEU
135
n
135
LEU
135
A
LYS
136
n
136
LYS
136
A
MET
137
n
137
MET
137
A
GLU
138
n
138
GLU
138
A
GLU
139
n
139
GLU
139
A
LYS
140
n
140
LYS
140
A
ALA
141
n
141
ALA
141
A
THR
142
n
142
THR
142
A
TYR
143
n
143
TYR
143
A
VAL
144
n
144
VAL
144
A
HIS
145
n
145
HIS
145
A
LYS
146
n
146
LYS
146
A
LYS
147
n
147
LYS
147
A
ASN
148
n
148
ASN
148
A
ASP
149
n
149
ASP
149
A
GLY
150
n
150
GLY
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
VAL
153
n
153
VAL
153
A
ASP
154
n
154
ASP
154
A
LEU
155
n
155
LEU
155
A
THR
156
n
156
THR
156
A
VAL
157
n
157
VAL
157
A
ASP
158
n
158
ASP
158
A
GLN
159
n
159
GLN
159
A
ALA
160
n
160
ALA
160
A
TRP
161
n
161
TRP
161
A
ARG
162
n
162
ARG
162
A
GLY
163
n
163
GLY
163
A
LYS
164
n
164
LYS
164
A
GLY
165
n
165
GLY
165
A
GLU
166
n
166
GLU
166
A
GLY
167
n
167
GLY
167
A
LEU
168
n
168
LEU
168
A
PRO
169
n
169
PRO
169
A
GLY
170
n
170
GLY
170
A
MET
171
n
171
MET
171
A
CYS
172
n
172
CYS
172
A
GLY
173
n
173
GLY
173
A
GLY
174
n
174
GLY
174
A
ALA
175
n
175
ALA
175
A
LEU
176
n
176
LEU
176
A
VAL
177
n
177
VAL
177
A
SER
178
n
178
SER
178
A
SER
179
n
179
SER
179
A
ASN
180
n
180
ASN
180
A
GLN
181
n
181
GLN
181
A
SER
182
n
182
SER
182
A
ILE
183
n
183
ILE
183
A
GLN
184
n
184
GLN
184
A
ASN
185
n
185
ASN
185
A
ALA
186
n
186
ALA
186
A
ILE
187
n
187
ILE
187
A
LEU
188
n
188
LEU
188
A
GLY
189
n
189
GLY
189
A
ILE
190
n
190
ILE
190
A
HIS
191
n
191
HIS
191
A
VAL
192
n
192
VAL
192
A
ALA
193
n
193
ALA
193
A
GLY
194
n
194
GLY
194
A
GLY
195
n
195
GLY
195
A
ASN
196
n
196
ASN
196
A
SER
197
n
197
SER
197
A
ILE
198
n
198
ILE
198
A
LEU
199
n
199
LEU
199
A
VAL
200
n
200
VAL
200
A
ALA
201
n
201
ALA
201
A
LYS
202
n
202
LYS
202
A
LEU
203
n
203
LEU
203
A
VAL
204
n
204
VAL
204
A
THR
205
n
205
THR
205
A
GLN
206
n
206
GLN
206
A
GLU
207
n
207
GLU
207
A
MET
208
n
208
MET
208
A
PHE
209
n
209
PHE
209
A
GLN
210
n
210
GLN
210
A
ASN
211
n
211
ASN
211
A
ILE
212
n
212
ILE
212
A
ASP
213
n
213
ASP
213
A
LYS
214
n
214
LYS
214
A
LYS
215
n
215
LYS
215
A
ILE
216
n
216
ILE
216
A
n
217
217
A
SER
1
n
1
SER
1
B
THR
2
n
2
THR
2
B
LEU
3
n
3
LEU
3
B
GLU
4
n
4
GLU
4
B
ILE
5
n
5
ILE
5
B
ALA
6
n
6
ALA
6
B
GLY
7
n
7
GLY
7
B
LEU
8
n
8
LEU
8
B
VAL
9
n
9
VAL
9
B
ARG
10
n
10
ARG
10
B
LYS
11
n
11
LYS
11
B
ASN
12
n
12
ASN
12
B
LEU
13
n
13
LEU
13
B
VAL
14
n
14
VAL
14
B
GLN
15
n
15
GLN
15
B
PHE
16
n
16
PHE
16
B
GLY
17
n
17
GLY
17
B
VAL
18
n
18
VAL
18
B
GLY
19
n
19
GLY
19
B
GLU
20
n
20
GLU
20
B
LYS
21
n
21
LYS
21
B
ASN
22
n
22
ASN
22
B
GLY
23
n
23
GLY
23
B
SER
24
n
24
SER
24
B
VAL
25
n
25
VAL
25
B
ARG
26
n
26
ARG
26
B
TRP
27
n
27
TRP
27
B
VAL
28
n
28
VAL
28
B
MET
29
n
29
MET
29
B
ASN
30
n
30
ASN
30
B
ALA
31
n
31
ALA
31
B
LEU
32
n
32
LEU
32
B
GLY
33
n
33
GLY
33
B
VAL
34
n
34
VAL
34
B
LYS
35
n
35
LYS
35
B
ASP
36
n
36
ASP
36
B
ASP
37
n
37
ASP
37
B
TRP
38
n
38
TRP
38
B
LEU
39
n
39
LEU
39
B
LEU
40
n
40
LEU
40
B
VAL
41
n
41
VAL
41
B
PRO
42
n
42
PRO
42
B
SER
43
n
43
SER
43
B
HIS
44
n
44
HIS
44
B
ALA
45
n
45
ALA
45
B
TYR
46
n
46
TYR
46
B
LYS
47
n
47
LYS
47
B
PHE
48
n
48
PHE
48
B
GLU
49
n
49
GLU
49
B
LYS
50
n
50
LYS
50
B
ASP
51
n
51
ASP
51
B
TYR
52
n
52
TYR
52
B
GLU
53
n
53
GLU
53
B
MET
54
n
54
MET
54
B
MET
55
n
55
MET
55
B
GLU
56
n
56
GLU
56
B
PHE
57
n
57
PHE
57
B
TYR
58
n
58
TYR
58
B
PHE
59
n
59
PHE
59
B
ASN
60
n
60
ASN
60
B
ARG
61
n
61
ARG
61
B
GLY
62
n
62
GLY
62
B
GLY
63
n
63
GLY
63
B
THR
64
n
64
THR
64
B
TYR
65
n
65
TYR
65
B
TYR
66
n
66
TYR
66
B
SER
67
n
67
SER
67
B
ILE
68
n
68
ILE
68
B
SER
69
n
69
SER
69
B
ALA
70
n
70
ALA
70
B
GLY
71
n
71
GLY
71
B
ASN
72
n
72
ASN
72
B
VAL
73
n
73
VAL
73
B
VAL
74
n
74
VAL
74
B
ILE
75
n
75
ILE
75
B
GLN
76
n
76
GLN
76
B
SER
77
n
77
SER
77
B
LEU
78
n
78
LEU
78
B
ASP
79
n
79
ASP
79
B
VAL
80
n
80
VAL
80
B
GLY
81
n
81
GLY
81
B
PHE
82
n
82
PHE
82
B
GLN
83
n
83
GLN
83
B
ASP
84
n
84
ASP
84
B
VAL
85
n
85
VAL
85
B
VAL
86
n
86
VAL
86
B
LEU
87
n
87
LEU
87
B
MET
88
n
88
MET
88
B
LYS
89
n
89
LYS
89
B
VAL
90
n
90
VAL
90
B
PRO
91
n
91
PRO
91
B
THR
92
n
92
THR
92
B
ILE
93
n
93
ILE
93
B
PRO
94
n
94
PRO
94
B
LYS
95
n
95
LYS
95
B
PHE
96
n
96
PHE
96
B
ARG
97
n
97
ARG
97
B
ASP
98
n
98
ASP
98
B
ILE
99
n
99
ILE
99
B
THR
100
n
100
THR
100
B
GLN
101
n
101
GLN
101
B
HIS
102
n
102
HIS
102
B
PHE
103
n
103
PHE
103
B
ILE
104
n
104
ILE
104
B
LYS
105
n
105
LYS
105
B
LYS
106
n
106
LYS
106
B
GLY
107
n
107
GLY
107
B
ASP
108
n
108
ASP
108
B
VAL
109
n
109
VAL
109
B
PRO
110
n
110
PRO
110
B
ARG
111
n
111
ARG
111
B
ALA
112
n
112
ALA
112
B
LEU
113
n
113
LEU
113
B
ASN
114
n
114
ASN
114
B
ARG
115
n
115
ARG
115
B
LEU
116
n
116
LEU
116
B
ALA
117
n
117
ALA
117
B
THR
118
n
118
THR
118
B
LEU
119
n
119
LEU
119
B
VAL
120
n
120
VAL
120
B
THR
121
n
121
THR
121
B
THR
122
n
122
THR
122
B
VAL
123
n
123
VAL
123
B
ASN
124
n
124
ASN
124
B
GLY
125
n
125
GLY
125
B
THR
126
n
126
THR
126
B
PRO
127
n
127
PRO
127
B
MET
128
n
128
MET
128
B
LEU
129
n
129
LEU
129
B
ILE
130
n
130
ILE
130
B
SER
131
n
131
SER
131
B
GLU
132
n
132
GLU
132
B
GLY
133
n
133
GLY
133
B
PRO
134
n
134
PRO
134
B
LEU
135
n
135
LEU
135
B
LYS
136
n
136
LYS
136
B
MET
137
n
137
MET
137
B
GLU
138
n
138
GLU
138
B
GLU
139
n
139
GLU
139
B
LYS
140
n
140
LYS
140
B
ALA
141
n
141
ALA
141
B
THR
142
n
142
THR
142
B
TYR
143
n
143
TYR
143
B
VAL
144
n
144
VAL
144
B
HIS
145
n
145
HIS
145
B
LYS
146
n
146
LYS
146
B
LYS
147
n
147
LYS
147
B
ASN
148
n
148
ASN
148
B
ASP
149
n
149
ASP
149
B
GLY
150
n
150
GLY
150
B
THR
151
n
151
THR
151
B
THR
152
n
152
THR
152
B
VAL
153
n
153
VAL
153
B
ASP
154
n
154
ASP
154
B
LEU
155
n
155
LEU
155
B
THR
156
n
156
THR
156
B
VAL
157
n
157
VAL
157
B
ASP
158
n
158
ASP
158
B
GLN
159
n
159
GLN
159
B
ALA
160
n
160
ALA
160
B
TRP
161
n
161
TRP
161
B
ARG
162
n
162
ARG
162
B
GLY
163
n
163
GLY
163
B
LYS
164
n
164
LYS
164
B
GLY
165
n
165
GLY
165
B
GLU
166
n
166
GLU
166
B
GLY
167
n
167
GLY
167
B
LEU
168
n
168
LEU
168
B
PRO
169
n
169
PRO
169
B
GLY
170
n
170
GLY
170
B
MET
171
n
171
MET
171
B
OCS
172
n
172
OCS
172
B
GLY
173
n
173
GLY
173
B
GLY
174
n
174
GLY
174
B
ALA
175
n
175
ALA
175
B
LEU
176
n
176
LEU
176
B
VAL
177
n
177
VAL
177
B
SER
178
n
178
SER
178
B
SER
179
n
179
SER
179
B
ASN
180
n
180
ASN
180
B
GLN
181
n
181
GLN
181
B
SER
182
n
182
SER
182
B
ILE
183
n
183
ILE
183
B
GLN
184
n
184
GLN
184
B
ASN
185
n
185
ASN
185
B
ALA
186
n
186
ALA
186
B
ILE
187
n
187
ILE
187
B
LEU
188
n
188
LEU
188
B
GLY
189
n
189
GLY
189
B
ILE
190
n
190
ILE
190
B
HIS
191
n
191
HIS
191
B
VAL
192
n
192
VAL
192
B
ALA
193
n
193
ALA
193
B
GLY
194
n
194
GLY
194
B
GLY
195
n
195
GLY
195
B
ASN
196
n
196
ASN
196
B
SER
197
n
197
SER
197
B
ILE
198
n
198
ILE
198
B
LEU
199
n
199
LEU
199
B
VAL
200
n
200
VAL
200
B
ALA
201
n
201
ALA
201
B
LYS
202
n
202
LYS
202
B
LEU
203
n
203
LEU
203
B
VAL
204
n
204
VAL
204
B
THR
205
n
205
THR
205
B
GLN
206
n
206
GLN
206
B
GLU
207
n
207
GLU
207
B
MET
208
n
208
MET
208
B
PHE
209
n
209
PHE
209
B
GLN
210
n
210
GLN
210
B
ASN
211
n
211
ASN
211
B
ILE
212
n
212
ILE
212
B
ASP
213
n
213
ASP
213
B
LYS
214
n
214
LYS
214
B
n
215
215
B
n
216
216
B
n
217
217
B
author_defined_assembly
2
dimeric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PQS
1
monomeric
software_defined_assembly
PQS
1
monomeric
2230
-27
19670
B
OCS
172
CYSTEINESULFONIC ACID
B
OCS
172
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_655
x+1,y,z
crystal symmetry operation
53.6000000000
0.0000000000
0.0000000000
A
O
TYR
66
A
O
TYR
66
A
N
PHE
59
A
N
PHE
59
A
O
GLU
56
A
O
GLU
56
A
N
GLY
19
A
N
GLY
19
A
O
VAL
14
A
O
VAL
14
A
N
ALA
31
A
N
ALA
31
A
O
LEU
32
A
O
LEU
32
A
N
LEU
40
A
N
LEU
40
A
O
LEU
39
A
O
LEU
39
A
N
MET
88
A
N
MET
88
A
O
LEU
87
A
O
LEU
87
A
N
GLN
76
A
N
GLN
76
A
O
THR
126
A
O
THR
126
A
N
VAL
123
A
N
VAL
123
A
O
THR
118
A
O
THR
118
A
N
VAL
177
A
N
VAL
177
A
O
LEU
176
A
O
LEU
176
A
N
GLY
189
A
N
GLY
189
A
O
ILE
190
A
O
ILE
190
A
N
LYS
202
A
N
LYS
202
A
O
LEU
199
A
O
LEU
199
A
N
GLY
163
A
N
GLY
163
A
O
ALA
160
A
O
ALA
160
A
N
GLU
138
A
N
GLU
138
A
O
ALA
141
A
O
ALA
141
A
N
VAL
157
A
N
VAL
157
B
O
TYR
66
B
O
TYR
66
B
N
PHE
59
B
N
PHE
59
B
O
GLU
56
B
O
GLU
56
B
N
GLY
19
B
N
GLY
19
B
O
VAL
14
B
O
VAL
14
B
N
ALA
31
B
N
ALA
31
B
O
LEU
32
B
O
LEU
32
B
N
LEU
40
B
N
LEU
40
B
O
LEU
39
B
O
LEU
39
B
N
MET
88
B
N
MET
88
B
O
LEU
87
B
O
LEU
87
B
N
GLN
76
B
N
GLN
76
B
O
THR
126
B
O
THR
126
B
N
VAL
123
B
N
VAL
123
B
O
THR
118
B
O
THR
118
B
N
VAL
177
B
N
VAL
177
B
O
LEU
176
B
O
LEU
176
B
N
GLY
189
B
N
GLY
189
B
O
ILE
190
B
O
ILE
190
B
N
LYS
202
B
N
LYS
202
B
O
LEU
199
B
O
LEU
199
B
N
GLY
163
B
N
GLY
163
B
O
ALA
160
B
O
ALA
160
B
N
GLU
138
B
N
GLU
138
B
O
ALA
141
B
O
ALA
141
B
N
VAL
157
B
N
VAL
157
1
A
GLU
217
A
GLU
217
1
Y
1
B
LYS
215
B
LYS
215
1
Y
1
B
ILE
216
B
ILE
216
1
Y
1
B
GLU
217
B
GLU
217
1
Y
1
15.15
2.30
115.30
130.45
A
A
A
CA
CB
CG
LEU
LEU
LEU
13
13
13
N
1
A
MET
29
-162.52
-153.78
1
A
LYS
35
-171.82
140.55
1
A
ASP
36
47.06
-115.09
1
A
ASN
114
90.27
-7.99
1
A
LYS
140
-167.58
111.87
1
A
ASN
148
-37.92
99.59
1
A
ASP
149
57.00
123.29
1
A
GLN
159
67.44
79.60
1
A
LEU
168
-174.73
123.44
1
A
SER
197
-164.46
27.82
1
B
MET
29
-165.68
-169.32
1
B
ASP
36
43.98
-113.58
1
B
ASP
51
-118.61
78.79
1
B
ASP
79
-115.74
-79.65
1
B
VAL
80
-145.46
-24.63
1
B
PHE
82
-154.69
-8.70
1
B
ASP
84
-106.64
-69.61
1
B
LYS
147
-29.79
-39.39
1
B
ASN
148
-65.69
-89.76
1
B
ASP
149
-146.18
-53.75
1
B
GLN
159
48.69
77.17
1
B
ASN
196
-90.64
-79.67
21.
MAXIMUM LIKELIHOOD VERSION OF X-PLOR USED INSTEAD OF
CRYSTALLOGRAPHIC RESIDUAL, SEE PANNU N.S. AND READ R.J.
(1996) ACTA CRYST, VOL.A50, PP.659-668
RESIDUES 147 - 151 IN BOTH MOLECULES, A AND B, ARE POORLY
DEFINED AND PRESUMABLY FLEXIBLE.
RESIDUES 147 - 151 IN BOTH MOLECULES, A AND B, ARE POORLY
DEFINED AND PRESUMABLY FLEXIBLE.
ASP A 36 AND ASP B 36:
UNUSUAL MAIN CHAIN CONFORMATIONAL ANGLES RESIDUE I+1 OF
II' REVERSE TURN AND WELL-DEFINED IN ELECTRON DENSITY
DESPITE BEING FLAGGED AN OUTLIER IN A RAMACHANDRAN PLOT.
0.2650000
0.2110000
0.2110000
2.0
20.0
1958
20059
11.
87.
1
2.0
MOLECULAR REPLACEMENT
INACTIVE DOUBLE MUTANT OF ALLAIRE ET AL. (1994), SEE REFERENCE 2.
0.25
6.0
0.26
2.0
20.0
107
3430
1
0
3322
0.011
1.79
27.7
1.64
0.3450000
0.2770000
2.13
174
1504
6
9.
67.
2.0
20.0
1HAV
25299
0.0673000
1
9.1
2.4
87.
0.2713000
2.0
2.15
1.4
1
1.5
67.
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
SDMS
data scaling
BIOMOL
phasing
X-PLOR
3.1
HEPATITIS A VIRUS 3C PROTEINASE
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
THR
2
A
THR
2
HELX_P
A
ASN
12
A
ASN
12
1
1
11
A
SER
43
A
SER
43
HELX_P
A
TYR
46
A
TYR
46
5
2
4
A
TYR
52
A
TYR
52
HELX_P
A
MET
54
A
MET
54
5
3
3
A
ALA
70
A
ALA
70
HELX_P
A
ASN
72
A
ASN
72
5
4
3
A
ILE
99
A
ILE
99
HELX_P
A
HIS
102
A
HIS
102
5
5
4
A
LYS
106
A
LYS
106
HELX_P
A
ARG
111
A
ARG
111
5
6
6
A
GLN
181
A
GLN
181
HELX_P
A
ILE
183
A
ILE
183
5
7
3
A
GLN
206
A
GLN
206
HELX_P
A
ASP
213
A
ASP
213
5
8
8
B
THR
2
B
THR
2
HELX_P
B
ASN
12
B
ASN
12
1
9
11
B
SER
43
B
SER
43
HELX_P
B
ALA
45
B
ALA
45
5
10
3
B
ALA
70
B
ALA
70
HELX_P
B
ASN
72
B
ASN
72
5
11
3
B
THR
100
B
THR
100
HELX_P
B
HIS
102
B
HIS
102
5
12
3
B
LYS
106
B
LYS
106
HELX_P
B
ARG
111
B
ARG
111
5
13
6
B
GLN
181
B
GLN
181
HELX_P
B
ILE
183
B
ILE
183
5
14
3
B
GLN
206
B
GLN
206
HELX_P
B
ASN
211
B
ASN
211
5
15
6
covale
1.331
both
B
MET
171
B
C
MET
171
1_555
B
OCS
172
B
N
OCS
172
1_555
covale
1.333
both
B
OCS
172
B
C
OCS
172
1_555
B
GLY
173
B
N
GLY
173
1_555
HYDROLASE
POLYPROTEIN, COAT PROTEIN, CORE PROTEIN, RNA-DIRECTED RNA POLYMERASE, HYDROLASE, THIOL PROTEASE
given
0.880800
-0.466100
-0.083200
0.251200
0.311300
0.916500
-0.401300
-0.828200
0.391300
-17.55410
-26.85540
18.58400
POLG_HPAVH
UNP
1
1520
P08617
POLG_HPAVH
UNP
2
1520
P08617
1520
1736
1HAV
1
217
P08617
A
1
1
217
1520
1736
1HAV
1
217
P08617
B
2
1
217
1
CYS
engineered mutation
SER
24
1HAV
A
P08617
UNP
1543
24
2
CYS
engineered mutation
SER
24
1HAV
B
P08617
UNP
1543
24
2
CYS
conflict
OCS
172
1HAV
B
P08617
UNP
1691
172
7
7
2
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
64
A
THR
64
A
SER
69
A
SER
69
A
GLU
56
A
GLU
56
A
ARG
61
A
ARG
61
A
LEU
13
A
LEU
13
A
GLY
19
A
GLY
19
A
VAL
25
A
VAL
25
A
LYS
35
A
LYS
35
A
TRP
38
A
TRP
38
A
PRO
42
A
PRO
42
A
VAL
85
A
VAL
85
A
LYS
89
A
LYS
89
A
VAL
74
A
VAL
74
A
SER
77
A
SER
77
A
THR
126
A
THR
126
A
GLU
132
A
GLU
132
A
ALA
117
A
ALA
117
A
VAL
123
A
VAL
123
A
ALA
175
A
ALA
175
A
SER
178
A
SER
178
A
ILE
187
A
ILE
187
A
GLY
194
A
GLY
194
A
ILE
198
A
ILE
198
A
LEU
203
A
LEU
203
A
ALA
160
A
ALA
160
A
LYS
164
A
LYS
164
A
LYS
136
A
LYS
136
A
GLU
138
A
GLU
138
A
LYS
140
A
LYS
140
A
LYS
146
A
LYS
146
A
THR
152
A
THR
152
A
ASP
158
A
ASP
158
B
TYR
65
B
TYR
65
B
SER
69
B
SER
69
B
GLU
56
B
GLU
56
B
ARG
61
B
ARG
61
B
LEU
13
B
LEU
13
B
GLY
19
B
GLY
19
B
ARG
26
B
ARG
26
B
LYS
35
B
LYS
35
B
TRP
38
B
TRP
38
B
PRO
42
B
PRO
42
B
VAL
85
B
VAL
85
B
LYS
89
B
LYS
89
B
VAL
74
B
VAL
74
B
GLN
76
B
GLN
76
B
THR
126
B
THR
126
B
GLU
132
B
GLU
132
B
ALA
117
B
ALA
117
B
VAL
123
B
VAL
123
B
ALA
175
B
ALA
175
B
SER
178
B
SER
178
B
ILE
187
B
ILE
187
B
GLY
194
B
GLY
194
B
ILE
198
B
ILE
198
B
LEU
203
B
LEU
203
B
ALA
160
B
ALA
160
B
LYS
164
B
LYS
164
B
LYS
136
B
LYS
136
B
GLU
138
B
GLU
138
B
LYS
140
B
LYS
140
B
HIS
145
B
HIS
145
B
VAL
153
B
VAL
153
B
ASP
158
B
ASP
158
CYS-HIS DYAD AND STABILIZING ELECTROSTATIC ENVIRONMENT (CYS 172, HIS 44, TYR 143).
Unknown
4
HIS 191 IN A POSITION TO HYDROGEN-BOND TO GLUTAMINE RESIDUE IN P1 POSITION OF PEPTIDE SUBSTRATE.
Unknown
4
CONSERVED SEQUENCE MOTIF KFRDI ON SURFACE OPPOSITE FROM PROTEOLYTIC ACTIVE SITE (LYS 95 TO ILE 99).
Unknown
4
BINDING SITE FOR RESIDUE CL B 218
B
CL
218
Software
2
A
CYS
172
A
CYS
172
4
1_555
A
HIS
44
A
HIS
44
4
1_555
A
TYR
143
A
TYR
143
4
1_555
A
HOH
223
D
HOH
4
1_555
A
HIS
191
A
HIS
191
4
1_555
A
GLU
132
A
GLU
132
4
1_555
A
HOH
221
D
HOH
4
1_555
A
HOH
226
D
HOH
4
1_555
A
LYS
95
A
LYS
95
4
1_555
A
ARG
97
A
ARG
97
4
1_555
A
ASP
98
A
ASP
98
4
1_555
A
HOH
223
D
HOH
4
1_555
A
ILE
75
A
ILE
75
2
1_655
B
THR
2
B
THR
2
2
1_555
1
P 1