1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Schueler, W.
Dong, C.-Z.
Wecker, K.
Roques, B.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
38
12984
12994
10.1021/bi990378d
10529168
NMR structure of the complex between the zinc finger protein NCp10 of Moloney murine leukemia virus and the single-stranded pentanucleotide d(ACGCC): comparison with HIV-NCp7 complexes.
1999
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
4
153
Three-Dimensional 1H NMR Structure of the Nucleocapsid Protein Ncp10 of Moloney Murine Leukemia Virus
1994
10.2210/pdb1a6b/pdb
pdb_00001a6b
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1465.001
DNA (5'-D(*AP*CP*GP*CP*C)-3')
1
syn
polymer
ONE ZINC ION BOUND IN CCHC BOX
4706.383
ZINC FINGER PROTEIN NCP10
CENTRAL DOMAIN RESIDUES 14-53
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
MOMULV
no
no
(DA)(DC)(DG)(DC)(DC)
ACGCC
A
polydeoxyribonucleotide
no
no
GERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQT
GERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQT
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1999-08-23
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-02-23
REL
ZN
ZINC ION
REPRESENTATIVE MODEL NUMBER: ZINC WAS ADDED IN 1.5EQ AS ZNCL2. THE STRUCTURE WAS DETERMINED USING 1H-NMR SPECTROSCOPY ON THE CENTRAL DOMAIN (14-53)NCP10.
LEAST RESTRAINT VIOLATIONS, LOWEST TOTAL ENERGY
50
20
NOESY
TOCSY
E.COSY
DQF-COSY
6.5
293
K
THE PROTEIN PART OF THE STRUCTURE WAS GENERATED IN A SIMULATED ANNEALING CALCULATION AND DOCKED WITH THE NUCLEOTIDE (IDEALIZED CONFORMATION) IN SUCCESSIVE ENERGY MINIMIZATIONS APPLYING FIRST INTRA, THEN INTERMOLECULAR NOE RESTRAINTS. THE CONFORMATION OF THE SINGLE STRANDED NUCLEOTIDE GETS DEFINED BY THE CONTACTS TO THE PROTEIN. FIFTY STRUCTURES OF THE COMPLEX WERE GENERATED BY SIMULATED ANNEALING AND ENERGY MINIMIZATION (MAXIMUM GRADIENT O.O2 KCAL/MOL/A2) THE NUCLEOTIDE CONFORMATION WAS KEPT FIXED DURING SIMULATED ANNEALING IN THE CONFORMATION OBTAINED IN THE FIRST STEP. TWENTY STRUCTURES WERE SELECTED WITH RESPECT TO RESTRAINT VIOLATIONS AND TOTAL ENERGY.
DYNAMICAL SIMULATED ANNEALING, ENERGY MINIMIZATION
BIOSYM
refinement
Discover
structure solution
BRUKER UXNMR
UXNMR
structure solution
BIOSYM/MSI FELIX
FELIX
600
Bruker
AMX600
ZN
55
3
ZN
ZN
55
B
A
1
n
1
DA
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
C
4
n
4
DC
4
A
C
5
n
5
DC
5
A
GLY
14
n
1
GLY
14
B
GLU
15
n
2
GLU
15
B
ARG
16
n
3
ARG
16
B
ARG
17
n
4
ARG
17
B
ARG
18
n
5
ARG
18
B
SER
19
n
6
SER
19
B
GLN
20
n
7
GLN
20
B
LEU
21
n
8
LEU
21
B
ASP
22
n
9
ASP
22
B
ARG
23
n
10
ARG
23
B
ASP
24
n
11
ASP
24
B
GLN
25
n
12
GLN
25
B
CYS
26
n
13
CYS
26
B
ALA
27
n
14
ALA
27
B
TYR
28
n
15
TYR
28
B
CYS
29
n
16
CYS
29
B
LYS
30
n
17
LYS
30
B
GLU
31
n
18
GLU
31
B
LYS
32
n
19
LYS
32
B
GLY
33
n
20
GLY
33
B
HIS
34
n
21
HIS
34
B
TRP
35
n
22
TRP
35
B
ALA
36
n
23
ALA
36
B
LYS
37
n
24
LYS
37
B
ASP
38
n
25
ASP
38
B
CYS
39
n
26
CYS
39
B
PRO
40
n
27
PRO
40
B
LYS
41
n
28
LYS
41
B
LYS
42
n
29
LYS
42
B
PRO
43
n
30
PRO
43
B
ARG
44
n
31
ARG
44
B
GLY
45
n
32
GLY
45
B
PRO
46
n
33
PRO
46
B
ARG
47
n
34
ARG
47
B
GLY
48
n
35
GLY
48
B
PRO
49
n
36
PRO
49
B
ARG
50
n
37
ARG
50
B
PRO
51
n
38
PRO
51
B
GLN
52
n
39
GLN
52
B
THR
53
n
40
THR
53
B
author_defined_assembly
2
dimeric
B
CYS
26
B
SG
CYS
13
1_555
B
ZN
55
C
ZN
ZN
1_555
B
CYS
29
B
SG
CYS
16
1_555
115.4
B
CYS
26
B
SG
CYS
13
1_555
B
ZN
55
C
ZN
ZN
1_555
B
HIS
34
B
NE2
HIS
21
1_555
106.1
B
CYS
29
B
SG
CYS
16
1_555
B
ZN
55
C
ZN
ZN
1_555
B
HIS
34
B
NE2
HIS
21
1_555
106.5
B
CYS
26
B
SG
CYS
13
1_555
B
ZN
55
C
ZN
ZN
1_555
B
CYS
39
B
SG
CYS
26
1_555
108.8
B
CYS
29
B
SG
CYS
16
1_555
B
ZN
55
C
ZN
ZN
1_555
B
CYS
39
B
SG
CYS
26
1_555
110.4
B
HIS
34
B
NE2
HIS
21
1_555
B
ZN
55
C
ZN
ZN
1_555
B
CYS
39
B
SG
CYS
26
1_555
109.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DG
3
0.111
SIDE CHAIN
2
A
DG
3
0.075
SIDE CHAIN
2
A
DC
5
0.070
SIDE CHAIN
3
A
DG
3
0.060
SIDE CHAIN
4
A
DG
3
0.074
SIDE CHAIN
4
B
ARG
23
0.103
SIDE CHAIN
6
A
DG
3
0.107
SIDE CHAIN
6
A
DC
4
0.093
SIDE CHAIN
7
A
DG
3
0.077
SIDE CHAIN
8
A
DG
3
0.092
SIDE CHAIN
8
A
DC
4
0.066
SIDE CHAIN
9
A
DG
3
0.102
SIDE CHAIN
9
A
DC
4
0.066
SIDE CHAIN
10
A
DG
3
0.096
SIDE CHAIN
11
B
TYR
28
0.084
SIDE CHAIN
12
A
DG
3
0.064
SIDE CHAIN
13
A
DG
3
0.079
SIDE CHAIN
13
B
ARG
17
0.077
SIDE CHAIN
14
A
DG
3
0.072
SIDE CHAIN
15
A
DG
3
0.082
SIDE CHAIN
15
A
DC
4
0.116
SIDE CHAIN
16
A
DG
3
0.070
SIDE CHAIN
17
A
DG
3
0.103
SIDE CHAIN
17
A
DC
4
0.074
SIDE CHAIN
18
A
DG
3
0.098
SIDE CHAIN
18
A
DC
4
0.067
SIDE CHAIN
19
A
DG
3
0.120
SIDE CHAIN
20
A
DG
3
0.084
SIDE CHAIN
20
A
DC
4
0.099
SIDE CHAIN
1
2.10
0.30
108.30
110.40
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
1
6.43
0.30
108.30
114.73
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
5.85
0.30
108.30
114.15
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
3.66
0.30
108.30
111.96
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
2
2.47
0.30
108.30
110.77
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
2
6.61
0.30
108.30
114.91
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
2
3.84
0.30
108.30
112.14
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
6.88
0.30
108.30
115.18
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
2
2.34
0.30
108.30
110.64
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
2
-11.39
1.40
111.70
100.31
B
B
B
CA
N
CD
PRO
PRO
PRO
49
49
49
N
3
-4.79
0.70
102.20
97.41
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
3
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
3
6.56
0.30
108.30
114.86
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
3
3.56
0.30
108.30
111.86
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
3
7.74
1.20
119.70
127.44
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
3
8.61
0.30
108.30
116.91
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
4
-4.62
0.70
102.20
97.58
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
4
5.20
0.30
108.30
113.50
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
4
7.72
0.30
108.30
116.02
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
4
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
4
7.27
1.20
119.70
126.97
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
4
4.46
0.30
108.30
112.76
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
4
-11.18
1.80
110.60
99.42
B
B
B
N
CA
CB
LYS
LYS
LYS
32
32
32
N
5
-6.17
1.00
110.10
103.93
A
A
A
C1'
O4'
C4'
DA
DA
DA
1
1
1
N
5
7.23
0.30
108.30
115.53
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
5
-3.65
0.40
104.50
100.85
A
A
A
O4'
C4'
C3'
DC
DC
DC
2
2
2
N
5
7.14
0.30
108.30
115.44
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
5
5.21
0.30
108.30
113.51
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
5
7.22
1.20
119.70
126.92
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
5
7.69
0.30
108.30
115.99
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
5
-11.22
1.80
110.60
99.38
B
B
B
N
CA
CB
LYS
LYS
LYS
32
32
32
N
6
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
6
6.72
0.30
108.30
115.02
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
6
4.29
0.30
108.30
112.59
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
6
-5.17
0.80
105.90
100.73
A
A
A
O4'
C1'
C2'
DC
DC
DC
4
4
4
N
6
4.81
0.30
108.30
113.11
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
7
-4.34
0.70
102.20
97.86
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
7
2.70
0.30
108.30
111.00
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
7
5.71
0.30
108.30
114.01
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
7
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
7
4.48
0.30
108.30
112.78
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
8
-4.82
0.70
102.20
97.38
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
8
6.26
0.30
108.30
114.56
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
8
2.94
0.30
108.30
111.24
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
8
6.07
0.30
108.30
114.37
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
8
-9.72
1.40
111.70
101.98
B
B
B
CA
N
CD
PRO
PRO
PRO
49
49
49
N
9
5.96
0.30
108.30
114.26
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
9
2.57
0.30
108.30
110.87
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
9
6.23
0.30
108.30
114.53
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
10
6.10
0.30
108.30
114.40
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
10
3.52
0.30
108.30
111.82
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
10
4.91
0.30
108.30
113.21
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
11
4.67
0.30
108.30
112.97
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
11
-2.99
0.40
104.50
101.51
A
A
A
O4'
C4'
C3'
DC
DC
DC
2
2
2
N
11
6.22
0.30
108.30
114.52
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
11
6.27
0.30
108.30
114.57
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
11
8.37
0.30
108.30
116.67
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
12
5.47
0.30
108.30
113.77
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
12
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
12
7.34
1.20
119.70
127.04
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
12
7.95
0.30
108.30
116.25
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
13
3.54
0.30
108.30
111.84
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
13
6.40
0.30
108.30
114.70
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
13
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
13
-5.09
0.80
105.90
100.81
A
A
A
O4'
C1'
C2'
DC
DC
DC
4
4
4
N
13
4.95
0.30
108.30
113.25
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
14
-4.56
0.70
102.20
97.64
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
14
6.18
0.30
108.30
114.48
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
14
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
14
7.35
1.20
119.70
127.05
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
14
6.35
0.30
108.30
114.65
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
15
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
15
6.16
0.30
108.30
114.46
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
15
2.66
0.30
108.30
110.96
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
15
4.82
0.30
108.30
113.12
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
15
9.30
1.50
119.30
128.60
B
B
B
C
N
CA
GLY
PRO
PRO
48
49
49
Y
15
-9.83
1.40
111.70
101.87
B
B
B
CA
N
CD
PRO
PRO
PRO
49
49
49
N
16
2.34
0.30
108.30
110.64
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
16
6.75
0.30
108.30
115.05
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
16
3.58
0.30
108.30
111.88
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
16
-4.96
0.80
105.90
100.94
A
A
A
O4'
C1'
C2'
DC
DC
DC
4
4
4
N
16
5.24
0.30
108.30
113.54
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
16
2.38
0.30
108.30
110.68
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
17
2.55
0.30
108.30
110.85
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
17
5.69
0.30
108.30
113.99
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
17
3.49
0.30
108.30
111.79
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
17
6.60
0.30
108.30
114.90
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
17
9.82
1.50
119.30
129.12
B
B
B
C
N
CA
GLY
PRO
PRO
48
49
49
Y
17
-9.48
1.40
111.70
102.22
B
B
B
CA
N
CD
PRO
PRO
PRO
49
49
49
N
18
3.07
0.30
108.30
111.37
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
18
5.71
0.30
108.30
114.01
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
18
3.67
0.30
108.30
111.97
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
18
5.72
0.30
108.30
114.02
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
18
9.33
1.50
119.30
128.63
B
B
B
C
N
CA
GLY
PRO
PRO
48
49
49
Y
18
-9.34
1.40
111.70
102.36
B
B
B
CA
N
CD
PRO
PRO
PRO
49
49
49
N
19
6.15
0.30
108.30
114.45
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
19
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
19
7.24
1.20
119.70
126.94
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
19
7.72
0.30
108.30
116.02
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
20
5.43
0.30
108.30
113.73
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
20
5.92
0.30
108.30
114.22
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
20
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
20
7.49
1.20
119.70
127.19
A
A
A
C3'
O3'
P
DG
DG
DC
3
3
4
Y
20
-4.83
0.80
105.90
101.07
A
A
A
O4'
C1'
C2'
DC
DC
DC
4
4
4
N
20
6.02
0.30
108.30
114.32
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
B
LYS
32
29.85
-117.38
1
B
ARG
47
-162.87
17.22
1
B
GLN
52
-179.36
-46.92
2
B
GLN
20
-151.32
-154.25
2
B
LYS
32
33.68
-113.84
2
B
PRO
43
-64.75
27.00
2
B
ARG
44
60.77
69.59
2
B
PRO
49
37.00
58.43
2
B
ARG
50
42.04
95.97
3
B
GLU
15
63.87
-78.79
3
B
LEU
21
60.46
93.07
3
B
TYR
28
-127.93
-54.13
3
B
PRO
49
-92.37
49.37
4
B
ASP
22
-147.59
-154.27
4
B
ARG
23
-40.49
-75.66
4
B
ALA
27
-83.97
48.28
4
B
TYR
28
-158.65
-53.68
4
B
LYS
32
-27.32
-66.77
4
B
HIS
34
-156.50
-158.20
4
B
ARG
47
70.62
-67.59
4
B
GLN
52
78.55
-51.32
5
B
GLU
15
-93.79
-104.83
5
B
SER
19
56.08
-150.56
5
B
GLN
20
-129.38
-73.03
5
B
ARG
23
-48.84
-75.75
5
B
TYR
28
-150.04
-54.69
5
B
LYS
32
-27.10
-63.76
5
B
PRO
43
-49.84
106.07
5
B
ARG
44
-155.56
67.56
5
B
ARG
47
-152.62
-48.18
6
B
ARG
16
75.21
-57.02
6
B
ARG
17
65.73
-126.24
6
B
SER
19
-157.50
-66.44
6
B
ASP
22
-93.14
-155.48
6
B
ALA
27
-101.10
46.09
6
B
TYR
28
-166.23
-48.49
6
B
CYS
39
-27.23
112.00
7
B
GLU
15
67.31
99.45
7
B
ARG
17
56.10
-120.51
7
B
ALA
27
-83.49
46.22
7
B
TYR
28
-168.85
-51.67
7
B
CYS
39
-34.83
126.76
7
B
GLN
52
62.08
177.45
8
B
ASP
22
57.41
-150.94
8
B
ALA
27
-77.63
48.47
8
B
TYR
28
-169.91
-53.21
8
B
LYS
30
39.69
55.45
8
B
CYS
39
-31.64
113.66
8
B
ARG
44
-155.55
50.60
8
B
PRO
49
32.58
55.54
8
B
ARG
50
39.14
99.36
8
B
GLN
52
49.51
73.43
9
B
GLU
15
62.32
-98.47
9
B
ARG
16
60.55
-81.30
9
B
SER
19
-95.99
-96.08
9
B
LEU
21
39.48
51.44
9
B
LYS
32
-12.92
-61.38
9
B
ARG
44
72.40
-67.90
9
B
PRO
49
-95.20
44.33
10
B
SER
19
-74.85
-94.46
10
B
GLU
31
-83.31
-145.46
10
B
ARG
44
78.15
-56.32
10
B
ARG
47
61.33
84.89
10
B
PRO
49
-97.91
51.84
11
B
ARG
16
76.31
-55.30
11
B
LEU
21
32.62
84.37
11
B
ASP
22
-65.87
-174.26
11
B
ARG
23
-48.43
-75.73
11
B
TYR
28
-152.38
-55.48
11
B
LYS
32
-26.91
-54.95
11
B
CYS
39
-26.02
103.74
11
B
ARG
44
76.89
-58.38
12
B
ARG
17
-170.92
-70.40
12
B
ARG
18
-173.74
146.49
12
B
SER
19
-59.49
109.75
12
B
LYS
32
-14.73
-66.82
12
B
CYS
39
-38.03
120.58
12
B
ARG
44
75.76
-55.39
12
B
ARG
47
66.52
-74.09
12
B
PRO
49
-87.85
48.14
13
B
ARG
16
57.34
-156.48
13
B
ARG
18
64.62
88.19
13
B
GLN
20
-152.07
-82.66
13
B
ASP
22
76.34
-170.00
13
B
ARG
23
-127.05
-61.79
13
B
GLN
52
-153.18
79.96
14
B
ARG
16
-169.66
-42.52
14
B
ARG
18
90.16
49.41
14
B
ASP
24
-179.77
-55.41
14
B
ARG
47
70.22
-72.60
14
B
PRO
49
-93.47
40.85
15
B
ARG
17
-153.56
82.04
15
B
SER
19
-160.36
-65.81
15
B
LEU
21
60.02
67.82
15
B
ASP
22
-132.90
-154.25
15
B
LYS
30
81.79
12.96
15
B
ARG
47
66.08
106.76
15
B
PRO
49
29.61
55.35
15
B
ARG
50
30.86
142.63
15
B
PRO
51
-76.51
-157.49
16
B
GLU
15
-153.84
-67.44
16
B
ARG
17
-167.00
-103.76
16
B
LEU
21
-153.24
57.64
16
B
ASP
22
-52.67
-86.23
16
B
ARG
23
-143.47
-59.42
16
B
LYS
32
-22.12
-81.81
17
B
GLU
15
-90.23
-75.36
17
B
ARG
16
-167.64
-63.77
17
B
ARG
17
-165.18
-40.30
17
B
ARG
18
74.19
-177.49
17
B
GLN
20
-77.41
-75.13
17
B
PRO
49
26.08
58.57
17
B
ARG
50
29.67
101.13
18
B
GLU
15
81.45
79.16
18
B
ARG
16
-162.38
87.82
18
B
ARG
17
56.24
79.13
18
B
GLN
20
-134.10
-47.21
18
B
LEU
21
-93.02
-122.43
18
B
ASP
22
170.38
-115.17
18
B
ARG
23
-123.40
-58.41
18
B
LYS
32
27.50
-94.22
18
B
PRO
43
-60.62
17.84
18
B
ARG
44
71.87
-53.24
18
B
PRO
49
28.88
55.12
18
B
ARG
50
43.06
137.19
18
B
GLN
52
72.14
174.96
19
B
ARG
16
-160.50
-45.87
19
B
GLN
20
-142.30
-143.64
19
B
ASP
22
69.80
172.29
19
B
PRO
43
-58.72
74.23
19
B
PRO
49
-93.99
-148.35
20
B
ARG
17
-154.70
65.38
20
B
ARG
18
62.81
89.43
20
B
GLN
20
65.18
161.63
20
B
LEU
21
-94.80
-60.73
20
B
TYR
28
-146.78
-56.73
20
B
GLU
31
-83.95
-159.42
20
B
PRO
43
-38.38
101.10
20
B
PRO
46
-53.78
101.78
20
B
ARG
47
-142.53
-57.48
NMR STRUCTURE OF THE COMPLEX BETWEEN THE ZINC FINGER PROTEIN NCP10 OF MOLONEY MURINE LEUKEMIA VIRUS AND A SEQUENCE OF THE PSI-PACKAGING DOMAIN OF HIV-1, 20 STRUCTURES
1
N
N
2
N
N
3
N
N
metalc
2.309
B
CYS
26
B
SG
CYS
13
1_555
B
ZN
55
C
ZN
ZN
1_555
metalc
2.275
B
CYS
29
B
SG
CYS
16
1_555
B
ZN
55
C
ZN
ZN
1_555
metalc
2.015
B
HIS
34
B
NE2
HIS
21
1_555
B
ZN
55
C
ZN
ZN
1_555
metalc
2.296
B
CYS
39
B
SG
CYS
26
1_555
B
ZN
55
C
ZN
ZN
1_555
Viral protein/DNA
NUCLEOCAPSID PROTEIN, INTERCALATION, NUCLEIC ACID, RETROVIRUS, ZINC FINGER, Viral protein-DNA COMPLEX
GAG_MLVMO
UNP
2
P03332
1A6B
PDB
1
1A6B
492
531
1A6B
14
53
P03332
B
1
1
40
1
5
1A6B
1
5
1A6B
A
2
1
5
ZINC BINDING SITE.
Unknown
4
BINDING SITE FOR RESIDUE ZN B 55
B
ZN
55
Software
4
B
CYS
26
B
CYS
13
4
1_555
B
CYS
29
B
CYS
16
4
1_555
B
HIS
34
B
HIS
21
4
1_555
B
CYS
39
B
CYS
26
4
1_555
B
CYS
26
B
CYS
13
4
1_555
B
CYS
29
B
CYS
16
4
1_555
B
HIS
34
B
HIS
21
4
1_555
B
CYS
39
B
CYS
26
4
1_555
1
P 1