8Y6P

Structure of the auto-inhibited Dark monomer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Dark and Dronc activation in Drosophila melanogaster.

Tian, L.Li, Y.Shi, Y.

(2024) Proc Natl Acad Sci U S A 121: e2312784121-e2312784121

  • DOI: https://doi.org/10.1073/pnas.2312784121
  • Primary Citation of Related Structures:  
    8Y6P

  • PubMed Abstract: 

    The onset of apoptosis is characterized by a cascade of caspase activation, where initiator caspases are activated by a multimeric adaptor complex known as the apoptosome. In Drosophila melanogaster , the initiator caspase Dronc undergoes autocatalytic activation in the presence of the Dark apoptosome. Despite rigorous investigations, the activation mechanism for Dronc remains elusive. Here, we report the cryo-EM structures of an auto-inhibited Dark monomer and a single-layered, multimeric Dark/Dronc complex. Our biochemical analysis suggests that the auto-inhibited Dark oligomerizes upon binding to Dronc, which is sufficient for the activation of both Dark and Dronc. In contrast, the previously observed double-ring Dark apoptosome may represent a non-functional or "off-pathway" conformation. These findings expand our understanding on the molecular mechanism of apoptosis in Drosophila .


  • Organizational Affiliation

    Beijing Frontier Research Center for Biological Structures, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Apaf-1 related killer DARKA [auth Q]1,446Drosophila melanogasterMutation(s): 0 
Gene Names: 
UniProt
Find proteins for Q7KLI1 (Drosophila melanogaster)
Explore Q7KLI1 
Go to UniProtKB:  Q7KLI1
Entity Groups  
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UniProt GroupQ7KLI1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


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Revision History  (Full details and data files)

  • Version 1.0: 2024-04-10
    Type: Initial release