8XVF

Globular domain of Trichinella spiralis calreticulin

PDB DOI: https://doi.org/10.2210/pdb8XVF/pdb

Classification: CHAPERONE
Organism(s): Trichinella spiralis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-01-15 Released: 2024-04-03
Deposition Author(s): Zhu, X.P., Jia, Z.H., Yu, W.
Funding Organization(s): National Natural Science Foundation of China (NSFC), Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å
R-Value Free: 0.243
R-Value Work: 0.194
R-Value Observed: 0.196

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

structure of globular domain of Trichinella spiralis calreticulin at 2.76 Angstroms resolution.

Zhu, X.P., Jia, Z.H., Yu, W.

To be published.

Macromolecule Content

Total Structure Weight: 253.91 kDa
Atom Count: 16,893
Modelled Residue Count: 2,008
Deposited Residue Count: 2,184
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Calreticulin	A, B, C, D, E A, B, C, D, E, F, G, H	273	Trichinella spiralis	Mutation(s): 0 Gene Names: CALR, T01_9409
UniProt
Find proteins for A0A0V1BA72 (Trichinella spiralis) Explore A0A0V1BA72 Go to UniProtKB: A0A0V1BA72
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0V1BA72
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA (Subject of Investigation/LOI) Query on CA Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth B] SDF format, chain K [auth C] SDF format, chain L [auth D] SDF format, chain M [auth E] SDF format, chain N [auth F] SDF format, chain O [auth G] SDF format, chain P [auth H] MOL2 format, chain I [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth C] MOL2 format, chain L [auth D] MOL2 format, chain M [auth E] MOL2 format, chain N [auth F] MOL2 format, chain O [auth G] MOL2 format, chain P [auth H]	I [auth A] J [auth B] K [auth C] L [auth D] M [auth E] I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth G] Focus chain P [auth H] Interactions & Density Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth G] Focus chain P [auth H]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å
R-Value Free: 0.243
R-Value Work: 0.194
R-Value Observed: 0.196
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.516	α = 90
b = 154.074	β = 108.32
c = 100.781	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2024-04-03

Deposition Author(s):

Zhu, X.P.

Jia, Z.H.

Yu, W.

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81672042
National Natural Science Foundation of China (NSFC)	China	82202549
Other government	China	7214213

Revision History (Full details and data files)

Version 1.0: 2024-04-03
Type: Initial release

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Help and Resources

8XVF

Globular domain of Trichinella spiralis calreticulin

structure of globular domain of Trichinella spiralis calreticulin at 2.76 Angstroms resolution.

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)