Download MendeleyThe crystal structure of SrtC2 sortase from Actinomyces oris
Osipiuk, J., Chang, C., Ton-That, H.L., Ton-That, H., Joachimiak, A.To be published.
8T28
The crystal structure of SrtC2 sortase from Actinomyces oris
- PDB DOI: https://doi.org/10.2210/pdb8T28/pdb
- Classification: HYDROLASE
- Organism(s): Actinomyces oris
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2023-06-05 Released: 2024-04-17
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.201
- R-Value Work: 0.167
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Class C sortase | 226 | Actinomyces oris | Mutation(s): 0 Gene Names: CYJ23_09785 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A], C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| CL Query on CL | D [auth A], E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.201
- R-Value Work: 0.167
- R-Value Observed: 0.169
- Space Group: P 62 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.39 | α = 90 |
| b = 90.39 | β = 90 |
| c = 101.704 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data scaling |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-04-17 Deposition Author(s): Osipiuk, J., Chang, C., Ton-That, H.L., Ton-That, H., Joachimiak, A., Center for Structural Biology of Infectious Diseases (CSBID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | 75N93022C00035 |
Revision History (Full details and data files)
- Version 1.0: 2024-04-17
Type: Initial release
