Download MendeleyCrystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with High Affinity DNA
Crespo, I., Weijers, D., Boer, D.R.To be published.
8OJ1
Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with High Affinity DNA
- PDB DOI: https://doi.org/10.2210/pdb8OJ1/pdb
- NAKB: 8OJ1
- Classification: TRANSCRIPTION
- Organism(s): Marchantia polymorpha
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-03-23 Released: 2024-04-03
- Funding Organization(s): Ministry of Economy and Competitiveness (MINECO)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.57 Å
- R-Value Free: 0.259
- R-Value Work: 0.242
- R-Value Observed: 0.243
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Auxin response factor | 366 | Marchantia polymorpha | Mutation(s): 0 Gene Names: MARPO_0011s0167 |  | |
UniProt | |||||
Find proteins for A0A0G3FH20 (Marchantia polymorpha) Explore A0A0G3FH20 Go to UniProtKB: A0A0G3FH20 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0G3FH20 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| HA7 | 21 | Marchantia polymorpha |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.57 Å
- R-Value Free: 0.259
- R-Value Work: 0.242
- R-Value Observed: 0.243
- Space Group: I 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.911 | α = 90 |
| b = 80.933 | β = 90 |
| c = 146.623 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MxCuBE | data collection |
| autoPROC | data processing |
| PHASER | phasing |
| Coot | model building |
| PHENIX | refinement |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-04-03 Deposition Author(s): Crespo, I., Weijers, D., Boer, D.R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Economy and Competitiveness (MINECO) | Spain | PID2020-117028 GB-I00 |
| Ministry of Economy and Competitiveness (MINECO) | Spain | BIO2016-77883-C2-2-P |
| Ministry of Economy and Competitiveness (MINECO) | Spain | FIS2015-72574-EXP |
Revision History (Full details and data files)
- Version 1.0: 2024-04-03
Type: Initial release
