Download MendeleyCrystal structure of the 4,5-DOPA-extradiol-dioxygenase from Beta vulgaris
Chiang, C.C., Hsu, C.H.To be published.
8IN2
4,5-DOPA-extradiol-dioxygenase from Beta vulgaris
- PDB DOI: https://doi.org/10.2210/pdb8IN2/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Beta vulgaris
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-03-08 Released: 2024-04-24
- Funding Organization(s): Ministry of Science and Technology (MoST, Taiwan)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.08 Å
- R-Value Free: 0.220
- R-Value Work: 0.167
- R-Value Observed: 0.172
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 4,5-DOPA dioxygenase extradiol | 276 | Beta vulgaris | Mutation(s): 0 Gene Names: DODA EC: 1.13.11.29 |  | |
UniProt | |||||
Find proteins for Q70FG7 (Beta vulgaris) Explore Q70FG7 Go to UniProtKB: Q70FG7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q70FG7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FE (Subject of Investigation/LOI) Query on FE | C [auth A], D [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.08 Å
- R-Value Free: 0.220
- R-Value Work: 0.167
- R-Value Observed: 0.172
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.873 | α = 90 |
| b = 95.873 | β = 90 |
| c = 124.908 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-04-24 Deposition Author(s): Chiang, C.C., Hsu, C.H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Science and Technology (MoST, Taiwan) | Taiwan | 111-2113-M-002-015-MY3 |
| Ministry of Science and Technology (MoST, Taiwan) | Taiwan | 111-2311-B-002-008-MY3 |
Revision History (Full details and data files)
- Version 1.0: 2024-04-24
Type: Initial release
