Download MendeleyA novel accessory protein stabilizes the capsid of two actinobacteriophages
Podgorski, J.M., Porgorski, J., Gosselin, S., Abad, L., Jacobs-Sera, D., Brown, C., Hatfull, G., Gogarten, P., Luque, A., White, S.J.To be published.
8GIU
Mycobacterium phage Patience
- PDB DOI: https://doi.org/10.2210/pdb8GIU/pdb
- EM Map EMD-40077: EMDB EMDataResource
- Classification: VIRUS
- Organism(s): Mycobacterium phage Patience
- Mutation(s): No
- Deposited: 2023-03-14 Released: 2023-05-24
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.39 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| gp_4 (capsid accessory protein) | A [auth Z], B [auth Y] | 102 | Mycobacterium phage Patience | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for G1JWB5 (Mycobacterium phage Patience) Explore G1JWB5 Go to UniProtKB: G1JWB5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G1JWB5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Capsid protein | 400 | Mycobacterium phage Patience | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for G1JWD4 (Mycobacterium phage Patience) Explore G1JWD4 Go to UniProtKB: G1JWD4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G1JWD4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| gp_22 (Minor Capsid Protein) | 232 | Mycobacterium phage Patience | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for G1JWD3 (Mycobacterium phage Patience) Explore G1JWD3 Go to UniProtKB: G1JWD3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G1JWD3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.39 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.20.1 |
| MODEL REFINEMENT | ISOLDE | 1.3 |
| RECONSTRUCTION | RELION | 3.1.0 |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-05-24 Deposition Author(s): Podgorski, J.M., White, S.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-05-24
Type: Initial release
