Download MendeleyCrystal structure of HipB(Lp) from Legionella pneumophila
Stogios, P.J.To be published.
8EZT
Crystal structure of HipB(Lp) from Legionella pneumophila
- PDB DOI: https://doi.org/10.2210/pdb8EZT/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Legionella pneumophila
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-11-01 Released: 2023-09-27
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.343
- R-Value Work: 0.297
- R-Value Observed: 0.300
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HipB(Lp) | 76 | Legionella pneumophila | Mutation(s): 0 Gene Names: lpg2368 |  | |
UniProt | |||||
Find proteins for Q5ZSZ8 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZSZ8 Go to UniProtKB: Q5ZSZ8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZSZ8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | E [auth A] F [auth A] G [auth B] H [auth B] I [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.343
- R-Value Work: 0.297
- R-Value Observed: 0.300
- Space Group: P 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.444 | α = 90 |
| b = 33.488 | β = 102.73 |
| c = 74.161 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
| PHENIX | model building |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-09-27 Deposition Author(s): Stogios, P.J., Skarina, T., Di Leo, R., Lin, J., Ensminger, A., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
Revision History (Full details and data files)
- Version 1.0: 2023-09-27
Type: Initial release
