Download MendeleyStructural characterization of PA0709
Cuthbert, B.J., Goulding, C.W., Ulijasz, A.T.To be published.
8ECX
PA0709 with glyoxal and BME modifications
- PDB DOI: https://doi.org/10.2210/pdb8ECX/pdb
- Classification: CYTOSOLIC PROTEIN
- Organism(s): Pseudomonas aeruginosa
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-09-02 Released: 2023-09-27
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.189
- R-Value Work: 0.165
- R-Value Observed: 0.167
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Antibiotic biosynthesis monooxygenase | 102 | Pseudomonas aeruginosa | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A072ZNL3 (Pseudomonas aeruginosa) Explore A0A072ZNL3 Go to UniProtKB: A0A072ZNL3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A072ZNL3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | I [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | G [auth A] H [auth A] J [auth B] K [auth B] L [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CME Query on CME | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O3 S2 |  | CYS |
| POK Query on POK | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C8 H16 N4 O4 |  | ARG |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.189
- R-Value Work: 0.165
- R-Value Observed: 0.167
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 109.013 | α = 90 |
| b = 148.984 | β = 90 |
| c = 120.184 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-09-27 Deposition Author(s): Cuthbert, B.J., Goulding, C.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-09-27
Type: Initial release - Version 1.1: 2023-11-15
Changes: Data collection, Derived calculations - Version 2.0: 2023-12-27
Type: Coordinate replacement
Reason: Model completeness
Changes: Advisory, Atomic model, Author supporting evidence, Data collection, Derived calculations, Polymer sequence, Refinement description, Structure summary
