Download MendeleyOld Yellow Enzyme 1 (NpOYE1) from Neptuniibacter sp.
Frkic, R.L., Jackson, C.J.To be published.
8E5I
Old Yellow Enzyme 1 (NpOYE1) from Neptuniibacter sp.
- PDB DOI: https://doi.org/10.2210/pdb8E5I/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Neptuniibacter sp.
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-08-22 Released: 2023-08-30
- Funding Organization(s): Australian Research Council (ARC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.195
- R-Value Work: 0.161
- R-Value Observed: 0.162
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alkene reductase | 360 | Neptuniibacter sp. | Mutation(s): 0 Gene Names: AXW15_12265 |  | |
UniProt | |||||
Find proteins for A0A136H5V4 (Neptuniibacter sp. Phe_28) Explore A0A136H5V4 Go to UniProtKB: A0A136H5V4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A136H5V4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMN Query on FMN | B [auth A] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | ||
| PEG Query on PEG | E [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | C [auth A], F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.195
- R-Value Work: 0.161
- R-Value Observed: 0.162
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.298 | α = 90 |
| b = 95.298 | β = 90 |
| c = 87.602 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-08-30 Deposition Author(s): Frkic, R.L., Jackson, C.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Australian Research Council (ARC) | Australia | CE200100012 |
Revision History (Full details and data files)
- Version 1.0: 2023-08-30
Type: Initial release
