Download MendeleyCrystal Structure of a toluene tolerance periplasmic transport protein from Neisseria gonorrhoeae
DeBouver, N.D., Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
8DTE
Crystal Structure of a toluene tolerance periplasmic transport protein from Neisseria gonorrhoeae
- PDB DOI: https://doi.org/10.2210/pdb8DTE/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Neisseria gonorrhoeae NCCP11945
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-07-25 Released: 2022-08-10
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.237
- R-Value Work: 0.200
- R-Value Observed: 0.203
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Periplasmic transport protein | 183 | Neisseria gonorrhoeae NCCP11945 | Mutation(s): 0 Gene Names: NGK_2593 |  | |
UniProt | |||||
Find proteins for B4RRD5 (Neisseria gonorrhoeae (strain NCCP11945)) Explore B4RRD5 Go to UniProtKB: B4RRD5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B4RRD5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | C [auth A], D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.237
- R-Value Work: 0.200
- R-Value Observed: 0.203
- Space Group: P 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.76 | α = 90 |
| b = 51.76 | β = 90 |
| c = 167.57 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-08-10 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-08-10
Type: Initial release - Version 1.1: 2024-02-14
Changes: Data collection - Version 1.2: 2024-04-03
Changes: Refinement description
