7ZUO

Crystal Structure of Ljungan virus 4 2A2 protein, P212121 form

PDB DOI: https://doi.org/10.2210/pdb7ZUO/pdb

Classification: VIRAL PROTEIN
Organism(s): Ljungan virus 64-7855
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-05-12 Released: 2023-05-24
Deposition Author(s): von Castelmur, E., Perrakis, A.
Funding Organization(s): Netherlands Organisation for Scientific Research (NWO)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.07 Å
R-Value Free: 0.205
R-Value Work: 0.172

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural Plasticity of Parechovirus H/NC-motif 2A proteins

von Castelmur, E., Perrakis, A.

To be published.

Macromolecule Content

Total Structure Weight: 83.17 kDa
Atom Count: 6,148
Modelled Residue Count: 740
Deposited Residue Count: 750
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein 2A	A, B, C, D, E A, B, C, D, E, F	125	Ljungan virus 64-7855	Mutation(s): 0
UniProt
Find proteins for C0J6D4 (Ljungan virus 64-7855) Explore C0J6D4 Go to UniProtKB: C0J6D4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C0J6D4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PGE Query on PGE Download Ideal Coordinates CCD File SDF format, chain J [auth C] SDF format, chain M [auth F] MOL2 format, chain J [auth C] MOL2 format, chain M [auth F]	J [auth C], M [auth F]	TRIETHYLENE GLYCOL C₆ H₁₄ O₄ ZIBGPFATKBEMQZ-UHFFFAOYSA-N		Interactions Focus chain J [auth C] Focus chain M [auth F] Interactions & Density Focus chain J [auth C] Focus chain M [auth F]
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A]	G [auth A]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain G [auth A] Interactions & Density Focus chain G [auth A]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain I [auth C] SDF format, chain L [auth D] MOL2 format, chain I [auth C] MOL2 format, chain L [auth D]	I [auth C], L [auth D]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain I [auth C] Focus chain L [auth D] Interactions & Density Focus chain I [auth C] Focus chain L [auth D]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain H [auth B] MOL2 format, chain H [auth B]	H [auth B]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain H [auth B] Interactions & Density Focus chain H [auth B]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain K [auth D] MOL2 format, chain K [auth D]	K [auth D]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain K [auth D] Interactions & Density Focus chain K [auth D]