7XIV

Structural insight into the interactions between Lloviu virus VP30 and nucleoprotein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.233 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insights into the interactions between lloviu virus VP30 and nucleoprotein.

Sun, W.Luan, F.Wang, J.Ma, L.Li, X.Yang, G.Hao, C.Qin, X.Dong, S.

(2022) Biochem Biophys Res Commun 616: 82-88

  • DOI: https://doi.org/10.1016/j.bbrc.2022.05.059
  • Primary Citation of Related Structures:  
    7XIV

  • PubMed Abstract: 

    The family Filoviridae comprises many notorious viruses, such as Ebola virus (EBOV) and Marburg virus (MARV), that can infect humans and nonhuman primates. Lloviu virus (LLOV), a less well studied filovirus, is considered a potential pathogen for humans. The VP30 C-terminal domain (CTD) of these filoviruses exhibits nucleoprotein (NP) binding and plays an essential role in viral transcription, replication and assembly. In this study, we confirmed the interactions between LLOV VP30 CTD and its NP fragment, and also determined the crystal structure of the chimeric dimeric LLOV NP-VP30 CTD at 2.50 Å resolution. The structure is highly conserved across the family Filoviridae. While in the dimer structure, only one VP30 CTD binds the NP fragment, which indicates that the interaction between LLOV VP30 CTD and NP is not strong. Our work provides a preliminary model to investigate the interactions between LLOV VP30 and NP and suggests a potential target for anti-filovirus drug development.


  • Organizational Affiliation

    School of Biological Science and Technology, University of Jinan, Jinan, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleocapsid protein,Minor nucleoprotein VP30
A, B
172Cuevavirus lloviuenseMutation(s): 0 
UniProt
Find proteins for G8EFI6 (Lloviu cuevavirus (isolate Bat/Spain/Asturias-Bat86/2003))
Explore G8EFI6 
Go to UniProtKB:  G8EFI6
Find proteins for G8EFI1 (Lloviu cuevavirus (isolate Bat/Spain/Asturias-Bat86/2003))
Explore G8EFI1 
Go to UniProtKB:  G8EFI1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsG8EFI1G8EFI6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.233 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.251α = 90
b = 64.251β = 90
c = 175.795γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32070267,31622007,31670237
Other governmentChinaNational key R&DProgram of China (2018YFD1000501)
Other governmentChinaShandong Provincial Natural Science Foundation, China (ZR2019ZD48, ZR2020QC057)
Other governmentChinaTaishan Scholars Project (tsqn201812079)
Other governmentChinaHigher Educational Science and Technology Program of Jinan City (2020GXRC058)

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-29
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description