7X56

A CBg-ParM filament with ADP

PDB DOI: https://doi.org/10.2210/pdb7X56/pdb
EM Map EMD-33009: EMDB EMDataResource

Classification: CELL CYCLE
Organism(s): Clostridium botulinum Bf
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2022-03-04 Released: 2023-03-08
Deposition Author(s): Koh, A., Ali, S., Robinson, R., Narita, A.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS), Japan Science and Technology

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

A new actin-like filament from Clostridium botulinum exhibits a new system of filament turn over

Koh, A., Ali, S., Popp, D., Tanaka, K., Kitaoku, Y., Miyazaki, N., Iwasaki, K., Mitsuoka, K., Robert, R., Narita, A.

To be published.

Macromolecule Content

Total Structure Weight: 165.06 kDa
Atom Count: 11,580
Modelled Residue Count: 1,425
Deposited Residue Count: 1,425
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ParM/StbA family protein	A, B, C, D, E	285	Clostridium botulinum Bf	Mutation(s): 0 Gene Names: EXN02_10840
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GDP (Subject of Investigation/LOI) Query on GDP Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain H [auth B] SDF format, chain J [auth C] SDF format, chain L [auth D] SDF format, chain N [auth E] MOL2 format, chain F [auth A] MOL2 format, chain H [auth B] MOL2 format, chain J [auth C] MOL2 format, chain L [auth D] MOL2 format, chain N [auth E]	F [auth A], H [auth B], J [auth C], L [auth D], N [auth E]	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Interactions Focus chain F [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain L [auth D] Focus chain N [auth E] Interactions & Density Focus chain F [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain L [auth D] Focus chain N [auth E]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain I [auth B] SDF format, chain K [auth C] SDF format, chain M [auth D] SDF format, chain O [auth E] MOL2 format, chain G [auth A] MOL2 format, chain I [auth B] MOL2 format, chain K [auth C] MOL2 format, chain M [auth D] MOL2 format, chain O [auth E]	G [auth A], I [auth B], K [auth C], M [auth D], O [auth E]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain I [auth B] Focus chain K [auth C] Focus chain M [auth D] Focus chain O [auth E] Interactions & Density Focus chain G [auth A] Focus chain I [auth B] Focus chain K [auth C] Focus chain M [auth D] Focus chain O [auth E]