Download MendeleyStructures of cohesin modules from Sca5 of Ruminococcus bromii
Cerqueira, F., Koropatkin, N.To be published.
7URP
Second cohesin module from Sca5 of Ruminococcus bromii
- PDB DOI: https://doi.org/10.2210/pdb7URP/pdb
- Classification: PROTEIN BINDING
- Organism(s): Ruminococcus bromii L2-63
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2022-04-22 Released: 2023-05-03
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.03 Å
- R-Value Free: 0.165
- R-Value Work: 0.142
- R-Value Observed: 0.144
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribonucleases G and E | 160 | Ruminococcus bromii L2-63 | Mutation(s): 0 Gene Names: RBL236_00045 |  | |
UniProt | |||||
Find proteins for A0A2N0UYJ0 (Ruminococcus bromii) Explore A0A2N0UYJ0 Go to UniProtKB: A0A2N0UYJ0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A2N0UYJ0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CA (Subject of Investigation/LOI) Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.03 Å
- R-Value Free: 0.165
- R-Value Work: 0.142
- R-Value Observed: 0.144
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 120.57 | α = 90 |
| b = 30.05 | β = 94.53 |
| c = 49.94 | γ = 90 |
| Software Name | Purpose |
|---|---|
| xia2 | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-05-03 Deposition Author(s): Cerqueira, F., Koropatkin, N.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-05-03
Type: Initial release - Version 1.1: 2024-05-22
Changes: Data collection
