Download MendeleyCrystal structure of a putative 3-hydroxypimelyl-CoA dehydrogenase, Hcd1, from Syntrophus aciditrophicus strain SB at 1.78 A resolution
Dinh, D.M., Thomas, L.M., Karr, E.A.(2023) Acta Crystallogr F Struct Biol Commun 79: 151-158
7SUB
3-oxoacyl-ACP reductase FabG
- PDB DOI: https://doi.org/10.2210/pdb7SUB/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Syntrophus aciditrophicus SB
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2021-11-16 Released: 2022-12-07
- Funding Organization(s): Department of Energy (DOE, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.212
- R-Value Work: 0.185
- R-Value Observed: 0.187
wwPDB Validation 3D Report Full Report
This is version 2.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-oxoacyl-reductase | 267 | Syntrophus aciditrophicus SB | Mutation(s): 0 Gene Names: SYN_01680 EC: 1.1.1.100 |  | |
UniProt | |||||
Find proteins for Q2LXS6 (Syntrophus aciditrophicus (strain SB)) Explore Q2LXS6 Go to UniProtKB: Q2LXS6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2LXS6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.212
- R-Value Work: 0.185
- R-Value Observed: 0.187
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.006 | α = 90 |
| b = 56.006 | β = 90 |
| c = 133.129 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-12-07 Deposition Author(s): Thomas, L.M., Karr, E.A., Dinh, D.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Department of Energy (DOE, United States) | United States | DE-FG02-96ER20214 |
Revision History (Full details and data files)
- Version 1.0: 2022-12-07
Type: Initial release - Version 2.0: 2023-05-24
Type: Coordinate replacement
Reason: Ligand identity
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Refinement description, Source and taxonomy, Structure summary - Version 2.1: 2023-06-07
Changes: Database references - Version 2.2: 2023-10-25
Changes: Data collection, Refinement description
