Download MendeleyThe binding of the lactobacilli S-layer protein to the bacterial cell through interaction with LTA
Eder, M., Gubensaek, N., Sagmeister, T., Grininger, C., Vejzovic, D., Damisch, E., Dordic, A., Codee, J., Pavkov-Keller, T.To be published.
7QFG
Crystal structure of S-layer protein SlpA from Lactobacillus acidophilus, domain III (aa 309-444)
- PDB DOI: https://doi.org/10.2210/pdb7QFG/pdb
- Classification: CELL ADHESION
- Organism(s): Lactobacillus acidophilus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2021-12-06 Released: 2022-12-21
- Funding Organization(s): Austrian Science Fund
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.184
- R-Value Work: 0.159
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| S-layer protein | 146 | Lactobacillus acidophilus | Mutation(s): 0 Gene Names: CXB72_00965 |  | |
UniProt | |||||
Find proteins for P35829 (Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)) Explore P35829 Go to UniProtKB: P35829 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P35829 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BTB Query on BTB | F [auth A] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N |  | ||
| CL Query on CL | B [auth A], C [auth A], D [auth A], E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.184
- R-Value Work: 0.159
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.628 | α = 90 |
| b = 43.943 | β = 98.824 |
| c = 42.488 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-12-21 Deposition Author(s): Sagmeister, T., Eder, M., Pavkov-Keller, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Austrian Science Fund | Austria | P29432 |
Revision History (Full details and data files)
- Version 1.0: 2022-12-21
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Refinement description
