7Q9Y

Cryo-EM structure of the octameric pore of Clostridium perfringens beta-toxin.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cryo-EM structure of the octameric pore of Clostridium perfringens beta-toxin.

Bruggisser, J.Iacovache, I.Musson, S.C.Degiacomi, M.T.Posthaus, H.Zuber, B.

(2022) EMBO Rep 23: e54856-e54856

  • DOI: https://doi.org/10.15252/embr.202254856
  • Primary Citation of Related Structures:  
    7Q9Y

  • PubMed Abstract: 

    Clostridium perfringens is one of the most widely distributed and successful pathogens producing an impressive arsenal of toxins. One of the most potent toxins produced is the C. perfringens β-toxin (CPB). This toxin is the main virulence factor of type C strains. We describe the cryo-electron microscopy (EM) structure of CPB oligomer. We show that CPB forms homo-octameric pores like the hetero-oligomeric pores of the bi-component leukocidins, with important differences in the receptor binding region and the N-terminal latch domain. Intriguingly, the octameric CPB pore complex contains a second 16-stranded β-barrel protrusion atop of the cap domain that is formed by the N-termini of the eight protomers. We propose that CPB, together with the newly identified Epx toxins, is a member a new subclass of the hemolysin-like family. In addition, we show that the β-barrel protrusion domain can be modified without affecting the pore-forming ability, thus making the pore particularly attractive for macromolecule sensing and nanotechnology. The cryo-EM structure of the octameric pore of CPB will facilitate future developments in both nanotechnology and basic research.


  • Organizational Affiliation

    Institute of Animal Pathology, Vetsuisse-Faculty, University of Bern, Bern, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Clostridium perfringens beta toxin
A, B, C, D, E
A, B, C, D, E, F, G, H
309Clostridium perfringens CPEMutation(s): 0 
Gene Names: beta toxin
UniProt
Find proteins for Q9L403 (Clostridium perfringens C)
Explore Q9L403 
Go to UniProtKB:  Q9L403
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9L403
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland179520

Revision History  (Full details and data files)

  • Version 1.0: 2022-10-19
    Type: Initial release
  • Version 1.1: 2022-12-14
    Changes: Data collection, Database references
  • Version 1.2: 2022-12-21
    Changes: Database references