7OC9

Structure of Bdellovibrio bacteriovorus Bd0675


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.198 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Target highlights in CASP14: Analysis of models by structure providers.

Alexander, L.T.Lepore, R.Kryshtafovych, A.Adamopoulos, A.Alahuhta, M.Arvin, A.M.Bomble, Y.J.Bottcher, B.Breyton, C.Chiarini, V.Chinnam, N.B.Chiu, W.Fidelis, K.Grinter, R.Gupta, G.D.Hartmann, M.D.Hayes, C.S.Heidebrecht, T.Ilari, A.Joachimiak, A.Kim, Y.Linares, R.Lovering, A.L.Lunin, V.V.Lupas, A.N.Makbul, C.Michalska, K.Moult, J.Mukherjee, P.K.Nutt, W.S.Oliver, S.L.Perrakis, A.Stols, L.Tainer, J.A.Topf, M.Tsutakawa, S.E.Valdivia-Delgado, M.Schwede, T.

(2021) Proteins 89: 1647-1672

  • DOI: https://doi.org/10.1002/prot.26247
  • Primary Citation of Related Structures:  
    7M6B, 7OC9

  • PubMed Abstract: 

    The biological and functional significance of selected Critical Assessment of Techniques for Protein Structure Prediction 14 (CASP14) targets are described by the authors of the structures. The authors highlight the most relevant features of the target proteins and discuss how well these features were reproduced in the respective submitted predictions. The overall ability to predict three-dimensional structures of proteins has improved remarkably in CASP14, and many difficult targets were modeled with impressive accuracy. For the first time in the history of CASP, the experimentalists not only highlighted that computational models can accurately reproduce the most critical structural features observed in their targets, but also envisaged that models could serve as a guidance for further studies of biologically-relevant properties of proteins.


  • Organizational Affiliation

    Biozentrum, University of Basel, Basel, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bd0675134Bdellovibrio bacteriovorus HD100Mutation(s): 0 
Gene Names: Bd0675
UniProt
Find proteins for Q6MQ12 (Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100))
Explore Q6MQ12 
Go to UniProtKB:  Q6MQ12
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6MQ12
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.198 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.49α = 90
b = 69.67β = 90
c = 85.85γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Comision Nacional Cientifica y Technologica (CONICYT)Chile72180329

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-05
    Type: Initial release
  • Version 1.1: 2021-11-03
    Changes: Data collection, Database references
  • Version 1.2: 2021-12-08
    Changes: Data collection, Database references