7M7A

Legionella pneumophila MavQ lipid kinase

  • Classification: TRANSFERASE
  • Organism(s): Legionella pneumophila
  • Expression System: Escherichia coli BL21(DE3)
  • Mutation(s): No 

  • Deposited: 2021-03-27 Released: 2021-04-28 
  • Deposition Author(s): Tomchick, D.R., Tagliabracci, V.S., Hsieh, T.S., Lopez, V.A.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI), National Institutes of Health/Office of the Director, Robert A. Welch Foundation, Cancer Prevention and Research Institute of Texas (CPRIT), National Center for Research and Development (Poland)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.241 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Dynamic remodeling of host membranes by self-organizing bacterial effectors.

Hsieh, T.S.Lopez, V.A.Black, M.H.Osinski, A.Pawlowski, K.Tomchick, D.R.Liou, J.Tagliabracci, V.S.

(2021) Science 372: 935-941

  • DOI: https://doi.org/10.1126/science.aay8118
  • Primary Citation of Related Structures:  
    7M7A

  • PubMed Abstract: 

    During infection, intracellular bacterial pathogens translocate a variety of effectors into host cells that modify host membrane trafficking for their benefit. We found a self-organizing system consisting of a bacterial phosphoinositide kinase and its opposing phosphatase that formed spatiotemporal patterns, including traveling waves, to remodel host cellular membranes. The Legionella effector MavQ, a phosphatidylinositol (PI) 3-kinase, was targeted to the endoplasmic reticulum (ER). MavQ and the Legionella PI 3-phosphatase SidP, even in the absence of other bacterial components, drove rapid PI 3-phosphate turnover on the ER and spontaneously formed traveling waves that spread along ER subdomains inducing vesicle and tubule budding. Thus, bacteria can exploit a self-organizing membrane-targeting mechanism to hijack host cellular structures for survival.


  • Organizational Affiliation

    Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Phosphoinositide 3-kinase MavQ
A, B, C, D
590Legionella pneumophilaMutation(s): 0 
Gene Names: lpg2975
EC: 3.1.3.64
UniProt
Find proteins for Q5ZRA8 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
Explore Q5ZRA8 
Go to UniProtKB:  Q5ZRA8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5ZRA8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.241 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.399α = 90
b = 210.235β = 90
c = 499.861γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data scaling
HKL-3000data reduction
PDB_EXTRACTdata extraction
SHELXDphasing
MLPHAREphasing
PARROTphasing
BUCCANEERmodel building
Cootmodel building

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesDP2GM137419
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM113079
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32GM008203-29
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesF30HL143859-01
National Institutes of Health/Office of the DirectorUnited StatesS10OD025018
Robert A. Welch FoundationUnited StatesI-1911
Robert A. Welch FoundationUnited StatesI-1789
Cancer Prevention and Research Institute of Texas (CPRIT)United StatesRP170674
National Center for Research and Development (Poland)PolandPPN/BEK/2018/1/00431
National Institutes of Health/Office of the DirectorUnited StatesS10OD021685

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-28
    Type: Initial release
  • Version 1.1: 2021-05-12
    Changes: Database references
  • Version 1.2: 2021-06-09
    Changes: Database references