Download MendeleyContact-dependent inhibition system from Serratia marcescens
Michalska, K., Nutt, W., Stols, L., Jedrzejczak, R., Hayes, C.S., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
7M5F
Contact-dependent inhibition system from Serratia marcescens BWH57
- PDB DOI: https://doi.org/10.2210/pdb7M5F/pdb
- Classification: TOXIN
- Organism(s): Serratia marcescens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2021-03-23 Released: 2021-05-12
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.59 Å
- R-Value Free: 0.167
- R-Value Work: 0.140
- R-Value Observed: 0.142
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CdiI | 98 | Serratia marcescens | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Toxin CdiA | B [auth C] | 143 | Serratia marcescens | Mutation(s): 0 Gene Names: SK68_03206 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLI Query on MLI | C [auth A], D [auth C], E [auth C] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.59 Å
- R-Value Free: 0.167
- R-Value Work: 0.140
- R-Value Observed: 0.142
- Space Group: P 21 21 2
- Diffraction Data: https://doi.org/10.18430/m37m5f
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.691 | α = 90 |
| b = 97.241 | β = 90 |
| c = 44.495 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-05-12 Deposition Author(s): Michalska, K., Nutt, W., Stols, L., Jedrzejczak, R., Hayes, C.S., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
Revision History (Full details and data files)
- Version 1.0: 2021-05-12
Type: Initial release - Version 1.1: 2021-08-18
Changes: Database references, Structure summary
