7JTK

Radial spoke 1 isolated from Chlamydomonas reinhardtii


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structures of radial spokes and associated complexes important for ciliary motility.

Gui, M.Ma, M.Sze-Tu, E.Wang, X.Koh, F.Zhong, E.D.Berger, B.Davis, J.H.Dutcher, S.K.Zhang, R.Brown, A.

(2021) Nat Struct Mol Biol 28: 29-37

  • DOI: https://doi.org/10.1038/s41594-020-00530-0
  • Primary Citation of Related Structures:  
    7JTK, 7JTS, 7JU4

  • PubMed Abstract: 

    In motile cilia, a mechanoregulatory network is responsible for converting the action of thousands of dynein motors bound to doublet microtubules into a single propulsive waveform. Here, we use two complementary cryo-EM strategies to determine structures of the major mechanoregulators that bind ciliary doublet microtubules in Chlamydomonas reinhardtii. We determine structures of isolated radial spoke RS1 and the microtubule-bound RS1, RS2 and the nexin-dynein regulatory complex (N-DRC). From these structures, we identify and build atomic models for 30 proteins, including 23 radial-spoke subunits. We reveal how mechanoregulatory complexes dock to doublet microtubules with regular 96-nm periodicity and communicate with one another. Additionally, we observe a direct and dynamically coupled association between RS2 and the dynein motor inner dynein arm subform c (IDAc), providing a molecular basis for the control of motor activity by mechanical signals. These structures advance our understanding of the role of mechanoregulation in defining the ciliary waveform.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 1
A, B
814Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q27YU0 (Chlamydomonas reinhardtii)
Explore Q27YU0 
Go to UniProtKB:  Q27YU0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ27YU0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 2
C, D
738Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q6UBQ3 (Chlamydomonas reinhardtii)
Explore Q6UBQ3 
Go to UniProtKB:  Q6UBQ3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6UBQ3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 3
E, F
516Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for P12759 (Chlamydomonas reinhardtii)
Explore P12759 
Go to UniProtKB:  P12759
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12759
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 4
G, H
465Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q01656 (Chlamydomonas reinhardtii)
Explore Q01656 
Go to UniProtKB:  Q01656
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ01656
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 5
I, J
521Chlamydomonas reinhardtiiMutation(s): 0 
EC: 1
UniProt
Find proteins for Q27YU7 (Chlamydomonas reinhardtii)
Explore Q27YU7 
Go to UniProtKB:  Q27YU7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ27YU7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 6
K, L
459Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q01657 (Chlamydomonas reinhardtii)
Explore Q01657 
Go to UniProtKB:  Q01657
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ01657
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 7
M, N
500Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DL29 (Chlamydomonas reinhardtii)
Explore A0A2K3DL29 
Go to UniProtKB:  A0A2K3DL29
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DL29
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 9
O, P, Q, R
269Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q27YU5 (Chlamydomonas reinhardtii)
Explore Q27YU5 
Go to UniProtKB:  Q27YU5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ27YU5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 10
S, T
216Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q27YU4 (Chlamydomonas reinhardtii)
Explore Q27YU4 
Go to UniProtKB:  Q27YU4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ27YU4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 11
U, V
204Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q27YU3 (Chlamydomonas reinhardtii)
Explore Q27YU3 
Go to UniProtKB:  Q27YU3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ27YU3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 12181Chlamydomonas reinhardtiiMutation(s): 0 
EC: 5.2.1.8
UniProt
Find proteins for A8I2U9 (Chlamydomonas reinhardtii)
Explore A8I2U9 
Go to UniProtKB:  A8I2U9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8I2U9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 14387Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8HNV0 (Chlamydomonas reinhardtii)
Explore A8HNV0 
Go to UniProtKB:  A8HNV0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8HNV0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 16LA [auth y],
MA [auth z],
Y,
Z
346Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IKR9 (Chlamydomonas reinhardtii)
Explore A8IKR9 
Go to UniProtKB:  A8IKR9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IKR9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein 8 kDa light chain, flagellar outer armAA [auth a],
BA [auth b],
CA [auth c],
DA [auth d]
91Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q39580 (Chlamydomonas reinhardtii)
Explore Q39580 
Go to UniProtKB:  Q39580
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39580
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown proteinEA [auth e]34Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar radial spoke protein 23FA [auth i],
GA [auth j]
586Chlamydomonas reinhardtiiMutation(s): 0 
EC: 2.7.4.6
UniProt
Find proteins for Q69B19 (Chlamydomonas reinhardtii)
Explore Q69B19 
Go to UniProtKB:  Q69B19
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ69B19
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b5 heme-binding domain-containing proteinHA [auth k]230Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DCN8 (Chlamydomonas reinhardtii)
Explore A0A2K3DCN8 
Go to UniProtKB:  A0A2K3DCN8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DCN8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized proteinIA [auth s]682Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3D359 (Chlamydomonas reinhardtii)
Explore A0A2K3D359 
Go to UniProtKB:  A0A2K3D359
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3D359
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Predicted proteinJA [auth u],
KA [auth v]
70Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JDM3 (Chlamydomonas reinhardtii)
Explore A8JDM3 
Go to UniProtKB:  A8JDM3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8JDM3
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-16
    Type: Initial release
  • Version 1.1: 2020-12-30
    Changes: Database references
  • Version 1.2: 2021-01-27
    Changes: Database references