Download MendeleyStructure of the yeast Swi/Snf complex in a nucleosome free state
Wang, C.C., Guo, Z.Y., Zhan, X.C., Yang, F.H., Wu, M.X., Zhang, X.F.(2020) Nat Commun
7C4J
Cryo-EM structure of the yeast Swi/Snf complex in a nucleosome free state
- PDB DOI: https://doi.org/10.2210/pdb7C4J/pdb
- EM Map EMD-30285: EMDB EMDataResource
- Classification: DNA BINDING PROTEIN
- Organism(s): Saccharomyces cerevisiae S288C
- Mutation(s): No
- Deposited: 2020-05-18 Released: 2020-07-15
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.89 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
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Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcription regulatory protein SNF12 | 566 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P53628 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53628 Go to UniProtKB: P53628 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P53628 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SWI/SNF complex subunit SWI3 | 825 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P32591 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32591 Go to UniProtKB: P32591 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P32591 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcription regulatory protein SNF6 | 332 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P18888 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P18888 Go to UniProtKB: P18888 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P18888 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SWI/SNF global transcription activator complex subunit SWP82 | 623 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P43554 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P43554 Go to UniProtKB: P43554 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P43554 | ||||
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Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SWI/SNF chromatin-remodeling complex subunit SNF5 | 905 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P18480 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P18480 Go to UniProtKB: P18480 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P18480 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcription regulatory protein SNF2 | G [auth H] | 1,703 | Saccharomyces cerevisiae S288C | Mutation(s): 0 EC: 3.6.4 |  |
UniProt | |||||
Find proteins for P22082 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P22082 Go to UniProtKB: P22082 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22082 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SWI/SNF chromatin-remodeling complex subunit SWI1 | H [auth I] | 1,314 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P09547 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P09547 Go to UniProtKB: P09547 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P09547 | ||||
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Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Unkown | I [auth G] | 82 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Regulator of Ty1 transposition protein 102 | 157 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P53330 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53330 Go to UniProtKB: P53330 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P53330 | ||||
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Entity ID: 10 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Actin-related protein 7 | 477 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q12406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12406 Go to UniProtKB: Q12406 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q12406 | ||||
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Entity ID: 11 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Actin-like protein ARP9 | 467 | Saccharomyces cerevisiae S288C | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q05123 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q05123 Go to UniProtKB: Q05123 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q05123 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.89 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2020-07-15 Deposition Author(s): Wang, C.C., Guo, Z.Y., Zhan, X.C., Zhang, X.F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 31930059 |
| National Natural Science Foundation of China (NSFC) | China | 81920108015 |
Revision History (Full details and data files)
- Version 1.0: 2020-07-15
Type: Initial release - Version 1.1: 2024-03-27
Changes: Data collection, Database references
