Download Mendeleystructure of Camplylobacter jejueni GAPDH in complex with ADP
Moody, P.C.E., Ayna, A.To be published.
7BEX
Glyceraldehyde 3-phosphate dehydrogenase from Campylobacter jejeuni - ADP complex
- PDB DOI: https://doi.org/10.2210/pdb7BEX/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-12-29 Released: 2022-01-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.191
- R-Value Work: 0.155
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glyceraldehyde-3-phosphate dehydrogenase | 333 | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 | Mutation(s): 0 Gene Names: gapA, Cj1403c EC: 1.2.1 |  | |
UniProt | |||||
Find proteins for Q0P8L1 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q0P8L1 Go to UniProtKB: Q0P8L1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0P8L1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP (Subject of Investigation/LOI) Query on ADP | D [auth A] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| BME Query on BME | E [auth A], F [auth A] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | G [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.191
- R-Value Work: 0.155
- Space Group: I 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.25 | α = 90 |
| b = 90.25 | β = 90 |
| c = 223.39 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| iMOSFLM | data reduction |
| pointless | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2022-01-12 Deposition Author(s): Moody, P.C.E., Ayna, A.
Revision History (Full details and data files)
- Version 1.0: 2022-01-12
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Derived calculations, Refinement description
