7AST

Apo Human RNA Polymerase III


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of human RNA polymerase III.

Ramsay, E.P.Abascal-Palacios, G.Daiss, J.L.King, H.Gouge, J.Pilsl, M.Beuron, F.Morris, E.Gunkel, P.Engel, C.Vannini, A.

(2020) Nat Commun 11: 6409-6409

  • DOI: https://doi.org/10.1038/s41467-020-20262-5
  • Primary Citation of Related Structures:  
    7AST, 7ASU, 7ASV

  • PubMed Abstract: 

    In eukaryotes, RNA Polymerase (Pol) III is specialized for the transcription of tRNAs and other short, untranslated RNAs. Pol III is a determinant of cellular growth and lifespan across eukaryotes. Upregulation of Pol III transcription is observed in cancer and causative Pol III mutations have been described in neurodevelopmental disorders and hypersensitivity to viral infection. Here, we report a cryo-EM reconstruction at 4.0 Å of human Pol III, allowing mapping and rationalization of reported genetic mutations. Mutations causing neurodevelopmental defects cluster in hotspots affecting Pol III stability and/or biogenesis, whereas mutations affecting viral sensing are located in proximity to DNA binding regions, suggesting an impairment of Pol III cytosolic viral DNA-sensing. Integrating x-ray crystallography and SAXS, we also describe the structure of the higher eukaryote specific RPC5 C-terminal extension. Surprisingly, experiments in living cells highlight a role for this module in the assembly and stability of human Pol III.


  • Organizational Affiliation

    Division of Structural Biology, The Institute of Cancer Research, London, SW7 3RP, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC1A [auth N]1,390Homo sapiensMutation(s): 0 
EC: 2.7.7.6
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GTEx:  ENSG00000148606 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC10B [auth A]108Homo sapiensMutation(s): 0 
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PHAROS:  Q9Y2Y1
GTEx:  ENSG00000161980 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC5C [auth B]67Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000177700 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC4D [auth C]58Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000147669 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC3E [auth D]150Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163882 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC2F [auth E]127Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100142 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC1G [auth F]210Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000099817 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC2H [auth G]133Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186184 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC1I [auth H]346Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171453 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC9J [auth I]148Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000241258 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC8K [auth J]204Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100413 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC5L [auth K]708Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000058600 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC4M [auth L]398Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000168495 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC2N [auth M]1,133Homo sapiensMutation(s): 0 
EC: 2.7.7.6
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GTEx:  ENSG00000013503 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC6O [auth Z]316Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000132664 
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UniProt GroupQ9H1D9
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC3P [auth X]534Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186141 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC7-betaQ [auth Y]36Homo sapiensMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.18.1-3865

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom200818/Z/16/Z
Cancer Research UKUnited KingdomCR-UK C47547/A21536
German Research Foundation (DFG)GermanyEN 1204/1-1

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-23
    Type: Initial release
  • Version 1.1: 2020-12-30
    Changes: Database references