Download MendeleyDdhaB with GDP-mannose
Naismith, J.H., Woodward, L.To be published.
7ANJ
DdahB, GDP-mannoheptose C3,5 epimerase from Campylobacter jejuni complexed to GDP-mannose
- PDB DOI: https://doi.org/10.2210/pdb7ANJ/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Campylobacter jejuni
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-10-11 Released: 2020-10-21
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.244
- R-Value Work: 0.185
- R-Value Observed: 0.188
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thymidine diphospho-4-keto-rhamnose 3,5-epimerase | 183 | Campylobacter jejuni | Mutation(s): 0 Gene Names: BBR99_05345, D0W34_08620, D5I02_08520, F0H18_08555, F1P94_09915, FRS42_06315, FVZ69_07850, FW031_08545, FW918_03925, FWZ96_07945... EC: 5.1.3.13 |  | |
UniProt | |||||
Find proteins for Q6EF58 (Campylobacter jejuni) Explore Q6EF58 Go to UniProtKB: Q6EF58 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6EF58 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDD Query on GDD | C [auth A] | GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE C16 H25 N5 O16 P2 MVMSCBBUIHUTGJ-GDJBGNAASA-N |  | ||
| GDP Query on GDP | D [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.244
- R-Value Work: 0.185
- R-Value Observed: 0.188
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.001 | α = 90 |
| b = 67.81 | β = 91.79 |
| c = 53.14 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| xia2 | data reduction |
| xia2 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-10-21 Deposition Author(s): Naismith, J.H., Woodward, L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 100209/Z/12/Z) |
Revision History (Full details and data files)
- Version 1.0: 2020-10-21
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description
