7A3W

Structure of Imine Reductase from Pseudomonas sp.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.192 

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This is version 1.2 of the entry. See complete history


Literature

Multifunctional biocatalyst for conjugate reduction and reductive amination.

Thorpe, T.W.Marshall, J.R.Harawa, V.Ruscoe, R.E.Cuetos, A.Finnigan, J.D.Angelastro, A.Heath, R.S.Parmeggiani, F.Charnock, S.J.Howard, R.M.Kumar, R.Daniels, D.S.B.Grogan, G.Turner, N.J.

(2022) Nature 604: 86-91

  • DOI: https://doi.org/10.1038/s41586-022-04458-x
  • Primary Citation of Related Structures:  
    7A3W

  • PubMed Abstract: 

    Chiral amine diastereomers are ubiquitous in pharmaceuticals and agrochemicals 1 , yet their preparation often relies on low-efficiency multi-step synthesis 2 . These valuable compounds must be manufactured asymmetrically, as their biochemical properties can differ based on the chirality of the molecule. Herein we characterize a multifunctional biocatalyst for amine synthesis, which operates using a mechanism that is, to our knowledge, previously unreported. This enzyme (EneIRED), identified within a metagenomic imine reductase (IRED) collection 3 and originating from an unclassified Pseudomonas species, possesses an unusual active site architecture that facilitates amine-activated conjugate alkene reduction followed by reductive amination. This enzyme can couple a broad selection of α,β-unsaturated carbonyls with amines for the efficient preparation of chiral amine diastereomers bearing up to three stereocentres. Mechanistic and structural studies have been carried out to delineate the order of individual steps catalysed by EneIRED, which have led to a proposal for the overall catalytic cycle. This work shows that the IRED family can serve as a platform for facilitating the discovery of further enzymatic activities for application in synthetic biology and organic synthesis.


  • Organizational Affiliation

    Department of Chemistry, University of Manchester, Manchester Institute of Biotechnology, Manchester, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)-dependent oxidoreductase
A, B
295Pseudomonas putidaMutation(s): 0 
Gene Names: HGP31_19350
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.192 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.44α = 90
b = 65.391β = 91.51
c = 81.877γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-25
    Type: Initial release
  • Version 1.1: 2023-03-08
    Changes: Database references
  • Version 1.2: 2024-02-07
    Changes: Data collection, Refinement description