Download MendeleyCrystal structure of ECL_RS08780, putative sugar transport system periplasmic sugar-binding protein
Stogios, P.J.To be published.
7V09
Crystal structure of ECL_RS08780, putative sugar transport system periplasmic sugar-binding protein
- PDB DOI: https://doi.org/10.2210/pdb7V09/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Enterobacter cloacae subsp. cloacae ATCC 13047
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-05-10 Released: 2022-05-18
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.296
- R-Value Work: 0.250
- R-Value Observed: 0.252
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Multiple sugar transport system periplasmic sugar-binding protein | 409 | Enterobacter cloacae subsp. cloacae ATCC 13047 | Mutation(s): 0 Gene Names: ECL_01781 |  | |
UniProt | |||||
Find proteins for A0A0H3CHG3 (Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56)) Explore A0A0H3CHG3 Go to UniProtKB: A0A0H3CHG3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3CHG3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | C [auth A], D [auth A], E [auth A], F [auth B], G [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.296
- R-Value Work: 0.250
- R-Value Observed: 0.252
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.956 | α = 90 |
| b = 67.618 | β = 104.22 |
| c = 86.656 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHENIX | phasing |
| PHENIX | model building |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-05-18 Deposition Author(s): Stogios, P.J., Skarina, T., Mesa, N., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
Revision History (Full details and data files)
- Version 1.0: 2022-05-18
Type: Initial release - Version 1.1: 2024-02-14
Changes: Data collection - Version 1.2: 2024-04-03
Changes: Refinement description
