7CJQ

Structure of DLA-88*001:04

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.253 
  • R-Value Observed: 0.254 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

Structure of canine MHC class I at 2.7 Angstroms resolution

Sun, Y.J., Ma, L.Z., Li, S.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MHC class I DLA-88
A, D
275Canis lupus familiarisMutation(s): 0 
UniProt
Find proteins for O46882 (Canis lupus familiaris)
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Go to UniProtKB:  O46882
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO46882
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-2-microglobulin
B, E
99Canis lupus familiarisMutation(s): 0 
Gene Names: B2M
UniProt
Find proteins for E2RN10 (Canis lupus familiaris)
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UniProt GroupE2RN10
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ARG-THR-ILE-SER-TYR-THR-TYR-PRO-PHE
C, F
9Canine distemper virus strain OnderstepoortMutation(s): 0 
UniProt
Find proteins for P24306 (Canine distemper virus (strain Onderstepoort))
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Go to UniProtKB:  P24306
Entity Groups  
UniProt GroupP24306
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.253 
  • R-Value Observed: 0.254 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.167α = 90
b = 92.837β = 90
c = 119.244γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China319 726 83

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-26
    Type: Initial release
  • Version 1.1: 2020-09-30
    Changes: Database references, Structure summary
  • Version 1.2: 2023-02-08
    Changes: Database references, Structure summary
  • Version 1.3: 2023-11-29
    Changes: Data collection, Refinement description