Download MendeleyCrystal structure of GDP-bound human GIMAP5
Schwefel, D., Daumke, O.To be published.
6Z3E
Crystal structure of GDP-bound human GIMAP5, amino acid residues 1-276
- PDB DOI: https://doi.org/10.2210/pdb6Z3E/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-05-20 Released: 2021-12-01
- Funding Organization(s): Helmholtz Association
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.268
- R-Value Work: 0.215
- R-Value Observed: 0.218
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GTPase IMAP family member 5 | 278 | Homo sapiens | Mutation(s): 0 Gene Names: GIMAP5, IAN4L1, IAN5, IMAP3 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96F15 (Homo sapiens) Explore Q96F15 Go to UniProtKB: Q96F15 | |||||
PHAROS: Q96F15 GTEx: ENSG00000196329 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q96F15 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP Query on GDP | C [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.268
- R-Value Work: 0.215
- R-Value Observed: 0.218
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.28 | α = 90 |
| b = 57.23 | β = 90 |
| c = 106.76 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-12-01 Deposition Author(s): Schwefel, D., Daumke, O.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Helmholtz Association | Germany | -- |
Revision History (Full details and data files)
- Version 1.0: 2021-12-01
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Refinement description
