6XT9

Subunits BBS 1,4,8,9,18 of the human BBSome complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the human BBSome core complex.

Klink, B.U.Gatsogiannis, C.Hofnagel, O.Wittinghofer, A.Raunser, S.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.53910
  • Primary Citation of Related Structures:  
    6XT9, 6XTB

  • PubMed Abstract: 

    The BBSome is a heterooctameric protein complex that plays a central role in primary cilia homeostasis. Its malfunction causes the severe ciliopathy Bardet-Biedl syndrome (BBS). The complex acts as a cargo adapter that recognizes signaling proteins such as GPCRs and links them to the intraflagellar transport machinery. The underlying mechanism is poorly understood. Here we present a high-resolution cryo-EM structure of a human heterohexameric core subcomplex of the BBSome. The structure reveals the architecture of the complex in atomic detail. It explains how the subunits interact with each other and how disease-causing mutations hamper this interaction. The complex adopts a conformation that is open for binding to membrane-associated GTPase Arl6 and a large positively charged patch likely strengthens the interaction with the membrane. A prominent negatively charged cleft at the center of the complex is likely involved in binding of positively charged signaling sequences of cargo proteins.


  • Organizational Affiliation

    Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 1 protein593Homo sapiensMutation(s): 0 
Gene Names: BBS1BBS2L2
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NFJ9 (Homo sapiens)
Explore Q8NFJ9 
Go to UniProtKB:  Q8NFJ9
PHAROS:  Q8NFJ9
GTEx:  ENSG00000174483 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NFJ9
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 4 proteinB [auth D]528Homo sapiensMutation(s): 0 
Gene Names: BBS4
UniProt & NIH Common Fund Data Resources
Find proteins for Q96RK4 (Homo sapiens)
Explore Q96RK4 
Go to UniProtKB:  Q96RK4
PHAROS:  Q96RK4
GTEx:  ENSG00000140463 
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UniProt GroupQ96RK4
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Tetratricopeptide repeat domain 8 isoform 2C [auth H]517Homo sapiensMutation(s): 0 
Gene Names: TTC8
UniProt & NIH Common Fund Data Resources
Find proteins for A0A0C4DGY3 (Homo sapiens)
Explore A0A0C4DGY3 
Go to UniProtKB:  A0A0C4DGY3
GTEx:  ENSG00000165533 
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UniProt GroupA0A0C4DGY3
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Protein PTHB1D [auth I]887Homo sapiensMutation(s): 0 
Gene Names: BBS9PTHB1
UniProt & NIH Common Fund Data Resources
Find proteins for Q3SYG4 (Homo sapiens)
Explore Q3SYG4 
Go to UniProtKB:  Q3SYG4
PHAROS:  Q3SYG4
GTEx:  ENSG00000122507 
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UniProt GroupQ3SYG4
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
BBSome-interacting protein 1E [auth J]139Homo sapiensMutation(s): 0 
Gene Names: BBIP1BBIP10NCRNA00081
UniProt & NIH Common Fund Data Resources
Find proteins for A8MTZ0 (Homo sapiens)
Explore A8MTZ0 
Go to UniProtKB:  A8MTZ0
PHAROS:  A8MTZ0
GTEx:  ENSG00000214413 
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UniProt GroupA8MTZ0
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPHIRE1.2-1.3

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2020-01-29
    Type: Initial release
  • Version 1.1: 2020-07-29
    Changes: Data collection