Download MendeleyThe crystal structure beta-lactamase from Desulfarculus baarsii DSM 2075
Chang, C., Welk, L., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
6WJM
The crystal structure beta-lactamase from Desulfarculus baarsii DSM 2075
- PDB DOI: https://doi.org/10.2210/pdb6WJM/pdb
- Classification: HYDROLASE
- Organism(s): Desulfarculus baarsii DSM 2075
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-04-14 Released: 2020-04-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.00 Å
- R-Value Free: 0.141
- R-Value Work: 0.123
- R-Value Observed: 0.123
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-lactamase | 298 | Desulfarculus baarsii DSM 2075 | Mutation(s): 0 Gene Names: Deba_2488 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for E1QJV5 (Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / LMG 7858 / VKM B-1802 / 2st14)) Explore E1QJV5 Go to UniProtKB: E1QJV5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E1QJV5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | C [auth A], D [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| ALA Query on ALA | B [auth A] | ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-REOHCLBHSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.00 Å
- R-Value Free: 0.141
- R-Value Work: 0.123
- R-Value Observed: 0.123
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.722 | α = 90 |
| b = 73.46 | β = 110.3 |
| c = 42.923 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SBC-Collect | data collection |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2020-04-22 Deposition Author(s): Chang, C., Welk, L., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2020-04-22
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description
