Download MendeleyThe crystal structure of a beta lactamase from Xanthomonas campestris pv. campestris str. ATCC 33913
Tan, K., Wu, R., Endres, M., Joachimiak, A.To be published.
6WGP
The crystal structure of a beta lactamase from Xanthomonas campestris pv. campestris str. ATCC 33913
- PDB DOI: https://doi.org/10.2210/pdb6WGP/pdb
- Classification: HYDROLASE
- Organism(s): Xanthomonas campestris pv. campestris
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-04-06 Released: 2020-04-29
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.186
- R-Value Work: 0.160
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-lactamase | 274 | Xanthomonas campestris pv. campestris | Mutation(s): 0 Gene Names: bla, D0A42_09675 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for H9AXM7 (Xanthomonas campestris pv. campestris) Explore H9AXM7 Go to UniProtKB: H9AXM7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | H9AXM7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | B [auth A] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| EDO Query on EDO | D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | C [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.186
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 97.262 | α = 90 |
| b = 66.894 | β = 112.656 |
| c = 43.895 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-04-29 Deposition Author(s): Tan, K., Wu, R., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
Revision History (Full details and data files)
- Version 1.0: 2020-04-29
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description - Version 1.2: 2023-11-15
Changes: Data collection
