Download MendeleyCrystal structure of the UBL domain of human NLE1
Halabelian, L., Zeng, H., Li, Y., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)To be published.
6WAJ
Crystal structure of the UBL domain of human NLE1
- PDB DOI: https://doi.org/10.2210/pdb6WAJ/pdb
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-03-25 Released: 2020-04-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.254
- R-Value Work: 0.248
- R-Value Observed: 0.249
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NLE1 | 98 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NVX2 (Homo sapiens) Explore Q9NVX2 Go to UniProtKB: Q9NVX2 | |||||
PHAROS: Q9NVX2 GTEx: ENSG00000073536 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9NVX2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UNX (Subject of Investigation/LOI) Query on UNX | B [auth A], C [auth A], D [auth A], E [auth A] | UNKNOWN ATOM OR ION X |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.254
- R-Value Work: 0.248
- R-Value Observed: 0.249
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 35.546 | α = 90 |
| b = 35.546 | β = 90 |
| c = 205.994 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2020-04-22 Deposition Author(s): Halabelian, L., Zeng, H., Li, Y., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2020-04-22
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description
