Download MendeleyAmidohydrolase 2 from Bifidobacterium longum subsp. infantis
Chang, C., Xu, X., Cui, H., Savchenko, A., Joachimiak, A.To be published.
6UVZ
Amidohydrolase 2 from Bifidobacterium longum subsp. infantis
- PDB DOI: https://doi.org/10.2210/pdb6UVZ/pdb
- Classification: HYDROLASE
- Organism(s): Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-11-04 Released: 2020-02-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.217
- R-Value Work: 0.181
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Amidohydrolase 2 | 258 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | Mutation(s): 0 Gene Names: Blon_2306 |  | |
UniProt | |||||
Find proteins for B7GNK8 (Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)) Explore B7GNK8 Go to UniProtKB: B7GNK8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B7GNK8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2PE Query on 2PE | F [auth A], G [auth B], H [auth D] | NONAETHYLENE GLYCOL C18 H38 O10 YZUUTMGDONTGTN-UHFFFAOYSA-N |  | ||
| CIT Query on CIT | I [auth D], J [auth E] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.217
- R-Value Work: 0.181
- R-Value Observed: 0.182
- Space Group: P 43 21 2
- Diffraction Data: https://doi.org/10.18430/m36uvz
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 166.528 | α = 90 |
| b = 166.528 | β = 90 |
| c = 151.693 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2020-02-26 Deposition Author(s): Chang, C., Xu, X., Cui, H., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2020-02-26
Type: Initial release
