6UFF

Structure of Ene-reductase 1 NostocER1 from cyanobacteria


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.176 

wwPDB Validation   3D Report Full Report

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This is version 1.3 of the entry. See complete history


Literature

Photoenzymatic Hydrogenation of Heteroaromatic Olefins Using 'Ene'-Reductases with Photoredox Catalysts.

Nakano, Y.Black, M.J.Meichan, A.J.Sandoval, B.A.Chung, M.M.Biegasiewicz, K.F.Zhu, T.Hyster, T.K.

(2020) Angew Chem Int Ed Engl 59: 10484-10488

  • DOI: https://doi.org/10.1002/anie.202003125
  • Primary Citation of Related Structures:  
    6UFF

  • PubMed Abstract: 

    Flavin-dependent 'ene'-reductases (EREDs) are highly selective catalysts for the asymmetric reduction of activated alkenes. This function is, however, limited to enones, enoates, and nitroalkenes using the native hydride transfer mechanism. Here we demonstrate that EREDs can reduce vinyl pyridines when irradiated with visible light in the presence of a photoredox catalyst. Experimental evidence suggests the reaction proceeds via a radical mechanism where the vinyl pyridine is reduced to the corresponding neutral benzylic radical in solution. DFT calculations reveal this radical to be "dynamically stable", suggesting it is sufficiently long-lived to diffuse into the enzyme active site for stereoselective hydrogen atom transfer. This reduction mechanism is distinct from the native one, highlighting the opportunity to expand the synthetic capabilities of existing enzyme platforms by exploiting new mechanistic models.


  • Organizational Affiliation

    Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ene-reductase 1
A, B, C, D, E
A, B, C, D, E, F, G, H
410Nostoc sp. PCC 7120 = FACHB-418Mutation(s): 0 
Gene Names: all1865
UniProt
Find proteins for Q8YVV8 (Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
Explore Q8YVV8 
Go to UniProtKB:  Q8YVV8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8YVV8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download Ideal Coordinates CCD File 
AA [auth H]
I [auth A]
L [auth B]
N [auth C]
Q [auth D]
AA [auth H],
I [auth A],
L [auth B],
N [auth C],
Q [auth D],
T [auth E],
W [auth F],
Y [auth G]
FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
BA [auth H]
J [auth A]
K [auth A]
M [auth B]
O [auth C]
BA [auth H],
J [auth A],
K [auth A],
M [auth B],
O [auth C],
P [auth C],
R [auth D],
S [auth D],
U [auth E],
V [auth E],
X [auth F],
Z [auth G]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.176 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.565α = 66.79
b = 95.589β = 89.91
c = 99.903γ = 82.58
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2020-03-25
    Type: Initial release
  • Version 1.1: 2020-04-01
    Changes: Database references
  • Version 1.2: 2020-07-01
    Changes: Database references
  • Version 1.3: 2023-10-11
    Changes: Data collection, Database references, Derived calculations, Refinement description