Download MendeleyCBDP35 Native structure
Hermoso, J.A., Bartual, S.G.To be published.
6S4S
CBDP35 Native structure
- PDB DOI: https://doi.org/10.2210/pdb6S4S/pdb
- Classification: HYDROLASE
- Organism(s): Listeria phage P35
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2019-06-28 Released: 2020-07-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.212
- R-Value Work: 0.186
- R-Value Observed: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PlyP35 | 140 | Listeria phage P35 | Mutation(s): 0 Gene Names: ply |  | |
UniProt | |||||
Find proteins for A8ATR6 (Listeria phage P35) Explore A8ATR6 Go to UniProtKB: A8ATR6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A8ATR6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PlyP35 | 139 | Listeria phage P35 | Mutation(s): 0 Gene Names: ply |  | |
UniProt | |||||
Find proteins for A8ATR6 (Listeria phage P35) Explore A8ATR6 Go to UniProtKB: A8ATR6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A8ATR6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PlyP35 | 140 | Listeria phage P35 | Mutation(s): 0 Gene Names: ply |  | |
UniProt | |||||
Find proteins for A8ATR6 (Listeria phage P35) Explore A8ATR6 Go to UniProtKB: A8ATR6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A8ATR6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLI Query on MLI | M [auth B], N [auth C], O [auth G], P [auth G], Q [auth G] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.212
- R-Value Work: 0.186
- R-Value Observed: 0.187
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 333.321 | α = 90 |
| b = 95.118 | β = 90.33 |
| c = 83.846 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2020-07-15 Deposition Author(s): Hermoso, J.A., Bartual, S.G.
Revision History (Full details and data files)
- Version 1.0: 2020-07-15
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description
