6S3F

Moringa seed protein Mo-CBP3-4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Towards a molecular understanding of the water purification properties of Moringa seed proteins.

Moulin, M.Mossou, E.Signor, L.Kieffer-Jaquinod, S.Kwaambwa, H.M.Nermark, F.Gutfreund, P.Mitchell, E.P.Haertlein, M.Forsyth, V.T.Rennie, A.R.

(2019) J Colloid Interface Sci 554: 296-304

  • DOI: https://doi.org/10.1016/j.jcis.2019.06.071
  • Primary Citation of Related Structures:  
    6S3F

  • PubMed Abstract: 

    Seed extracts from Moringa oleifera are of wide interest for use in water purification where they can play an important role in flocculation; they also have potential as anti-microbial agents. Previous work has focused on the crude protein extract. Here we describe the detailed biophysical characterization of individual proteins from these seeds. The results provide new insights relating to the active compounds involved. One fraction, designated Mo-CBP3, has been characterized at a molecular level using a range of biochemical and biophysical techniques including liquid chromatography, X-ray diffraction, mass spectrometry, and neutron reflection. The interfacial behavior is of particular interest in considering water purification applications and interactions with both charged (e.g. silica) and uncharged (alumina) surfaces were studied. The reflection studies show that, in marked contrast to the crude extract, only a single layer of the purified Mo-CBP3 binds to a silica interface and that there is no binding to an alumina interface. These observations are consistent with the crystallographic structure of Mo-CBP3-4, which is one of the main isoforms of the Mo-CBP3 fraction. The results are put in context of previous studies of the properties of the crude extract. This work shows possible routes to development of separation processes that would be based on the specific properties of individual proteins.


  • Organizational Affiliation

    Institut Laue-Langevin, 71 Avenue des Martyrs, 38042 Grenoble Cedex 9, France; Faculty of Natural Sciences, Keele University, Staffordshire ST5 5BG, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
2S albumin65Moringa oleiferaMutation(s): 0 
UniProt
Find proteins for W5S2D2 (Moringa oleifera)
Explore W5S2D2 
Go to UniProtKB:  W5S2D2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5S2D2
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
2S albumin25Moringa oleiferaMutation(s): 0 
UniProt
Find proteins for W5S2D2 (Moringa oleifera)
Explore W5S2D2 
Go to UniProtKB:  W5S2D2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5S2D2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.184 
  • Space Group: I 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 108.07α = 90
b = 108.07β = 90
c = 43.62γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
SHELXDEphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-07-24
    Type: Initial release