6RWC

crystal structure of chicken beta-microseminoprotein-like 3 (MSMB3)

PDB DOI: https://doi.org/10.2210/pdb6RWC/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Gallus gallus
Mutation(s): No

Deposited: 2019-06-04 Released: 2020-07-15
Deposition Author(s): Coste, F., Rehault-godbert, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.14 Å
R-Value Free: 0.243
R-Value Work: 0.221
R-Value Observed: 0.222

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Three-dimensional structures of avian beta-microseminoproteins: insight from the chicken egg-specific beta-microseminoprotein 3 paralog

Coste, F., Moreau, T., Labas, V., Chesse, M., Bregeon, M., Meudal, H., Loth, K., Castaing, B., Guyot, N., Rehault-Godbert, S.

(2021) FEBS Open Bio

DOI: https://doi.org/10.1002/2211-5463.13166

Macromolecule Content

Total Structure Weight: 20.66 kDa
Atom Count: 1,377
Modelled Residue Count: 168
Deposited Residue Count: 174
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
chicken beta-microseminoprotein-like 3	A, B	87	Gallus gallus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1PE Query on 1PE Download Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A]	G [auth A]	PENTAETHYLENE GLYCOL C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Interactions & Density Focus chain G [auth A]
CIT Query on CIT Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A]	E [auth A]	CITRIC ACID C₆ H₈ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain H [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain H [auth B]	C [auth A], D [auth A], H [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain H [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain H [auth B]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A]	F [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Interactions & Density Focus chain F [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.14 Å
R-Value Free: 0.243
R-Value Work: 0.221
R-Value Observed: 0.222
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.176	α = 90
b = 101.047	β = 90
c = 36.907	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-07-15

Deposition Author(s):

Coste, F.

Rehault-godbert, S.

Revision History (Full details and data files)

Version 1.0: 2020-07-15
Type: Initial release
Version 1.1: 2021-07-28
Changes: Database references
Version 1.2: 2024-01-24
Changes: Data collection, Database references, Refinement description

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Help and Resources

6RWC

crystal structure of chicken beta-microseminoprotein-like 3 (MSMB3)

Three-dimensional structures of avian beta-microseminoproteins: insight from the chicken egg-specific beta-microseminoprotein 3 paralog

Entity ID: 1

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)