6RSG

NMR structure of pleurocidin VA in SDS micelles


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 50 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A pleurocidin analogue with greater conformational flexibility, enhanced antimicrobial potency and in vivo therapeutic efficacy.

Manzo, G.Hind, C.K.Ferguson, P.M.Amison, R.T.Hodgson-Casson, A.C.Ciazynska, K.A.Weller, B.J.Clarke, M.Lam, C.Man, R.C.H.Shaughnessy, B.G.O.Clifford, M.Bui, T.T.Drake, A.F.Atkinson, R.A.Lam, J.K.W.Pitchford, S.C.Page, C.P.Phoenix, D.A.Lorenz, C.D.Sutton, J.M.Mason, A.J.

(2020) Commun Biol 3: 697-697

  • DOI: https://doi.org/10.1038/s42003-020-01420-3
  • Primary Citation of Related Structures:  
    6RSF, 6RSG

  • PubMed Abstract: 

    Antimicrobial peptides (AMPs) are a potential alternative to classical antibiotics that are yet to achieve a therapeutic breakthrough for treatment of systemic infections. The antibacterial potency of pleurocidin, an AMP from Winter Flounder, is linked to its ability to cross bacterial plasma membranes and seek intracellular targets while also causing membrane damage. Here we describe modification strategies that generate pleurocidin analogues with substantially improved, broad spectrum, antibacterial properties, which are effective in murine models of bacterial lung infection. Increasing peptide-lipid intermolecular hydrogen bonding capabilities enhances conformational flexibility, associated with membrane translocation, but also membrane damage and potency, most notably against Gram-positive bacteria. This negates their ability to metabolically adapt to the AMP threat. An analogue comprising D-amino acids was well tolerated at an intravenous dose of 15 mg/kg and similarly effective as vancomycin in reducing EMRSA-15 lung CFU. This highlights the therapeutic potential of systemically delivered, bactericidal AMPs.


  • Organizational Affiliation

    Institute of Pharmaceutical Science, School of Cancer & Pharmaceutical Science, King's College London, Franklin-Wilkins Building, 150 Stamford Street, London, SE1 9NH, UK.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Pleurocidin25Pseudopleuronectes americanusMutation(s): 2 
Membrane Entity: Yes 
UniProt
Find proteins for P81941 (Pseudopleuronectes americanus)
Explore P81941 
Go to UniProtKB:  P81941
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81941
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 50 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-09
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references, Other