Download MendeleyCrystal structure of eukaryotic O-GlcNAcase HAT-like domain
Raimi, O.G., Gorelik, A.To be published.
6R45
Crystal structure of eukaryotic O-GlcNAcase HAT-like domain
- PDB DOI: https://doi.org/10.2210/pdb6R45/pdb
- Classification: TRANSFERASE
- Organism(s): Trichoplax adhaerens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-03-21 Released: 2020-04-08
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.240
- R-Value Work: 0.193
- R-Value Observed: 0.194
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| O-GlcNAcase | 211 | Trichoplax adhaerens | Mutation(s): 0 EC: 3.2.1.169 |  | |
UniProt | |||||
Find proteins for A0A0D5X2Y8 (Trichoplax adhaerens) Explore A0A0D5X2Y8 Go to UniProtKB: A0A0D5X2Y8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0D5X2Y8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | C [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.240
- R-Value Work: 0.193
- R-Value Observed: 0.194
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.25 | α = 87.52 |
| b = 43.52 | β = 85.24 |
| c = 59.84 | γ = 87.58 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-04-08 Deposition Author(s): Raimi, O.G., Gorelik, A., Hopkins-Navratilova, I., Aristotelous, T., Ferenbach, A., vanAalten, D.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | -- |
Revision History (Full details and data files)
- Version 1.0: 2020-04-08
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description
