Download MendeleyStructural Characterization of Beta Cyanoalanine Synthase from Tetranychus Urticae
Daneshian, L., Schlachter, C., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.To be published.
6PMU
Structural Characterization of Beta Cyanoalanine Synthase from Tetranychus Urticae
- PDB DOI: https://doi.org/10.2210/pdb6PMU/pdb
- Classification: TRANSFERASE
- Organism(s): Tetranychus urticae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-07-02 Released: 2020-07-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.223
- R-Value Work: 0.180
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
Currently 6PMU does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-cyanoalanine synthase | 321 | Tetranychus urticae | Mutation(s): 0 Gene Names: 107363798 |  | |
UniProt | |||||
Find proteins for T1KF23 (Tetranychus urticae) Explore T1KF23 Go to UniProtKB: T1KF23 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | T1KF23 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP (Subject of Investigation/LOI) Query on PLP | C [auth A], D [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.223
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 91.387 | α = 90 |
| b = 91.387 | β = 90 |
| c = 137.426 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MOLREP | phasing |
Structure Validation
Currently 6PMU does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2020-07-08 Deposition Author(s): Daneshian, L., Schlachter, C., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.
Revision History (Full details and data files)
- Version 1.0: 2020-07-08
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
