Download MendeleyCrystal structure of Sel1 repeat protein from Oxalobacter formigenes
Chang, C., Tesar, C., Endres, M., Babnigg, G., Hassan, H., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
6ONW
Crystal structure of Sel1 repeat protein from Oxalobacter formigenes
- PDB DOI: https://doi.org/10.2210/pdb6ONW/pdb
- Classification: HYDROLASE
- Organism(s): Oxalobacter formigenes OXCC13
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-04-22 Released: 2020-04-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.95 Å
- R-Value Free: 0.259
- R-Value Work: 0.211
- R-Value Observed: 0.213
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Sel1 repeat protein | 379 | Oxalobacter formigenes OXCC13 | Mutation(s): 0 Gene Names: OFBG_00639 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for C3X8T5 (Oxalobacter formigenes OXCC13) Explore C3X8T5 Go to UniProtKB: C3X8T5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C3X8T5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | C [auth A], D [auth A], F [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.95 Å
- R-Value Free: 0.259
- R-Value Work: 0.211
- R-Value Observed: 0.213
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/m36onw
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.773 | α = 90 |
| b = 74.079 | β = 90 |
| c = 194.589 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2020-04-29 Deposition Author(s): Chang, C., Tesar, C., Endres, M., Babnigg, G., Hassan, H., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2020-04-29
Type: Initial release
