Download MendeleyStructure of an uncharacterized protein from Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)
Abendroth, J., Horanyi, P.S., Lorimer, D.D., Edwards, T.E.To be published.
6OKH
Structure of an uncharacterized protein from Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)
- PDB DOI: https://doi.org/10.2210/pdb6OKH/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Leptospira borgpetersenii serovar Hardjo-bovis str. JB197
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2019-04-12 Released: 2019-05-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.200
- R-Value Work: 0.169
- R-Value Observed: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 190 | Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 | Mutation(s): 0 Gene Names: LBJ_2390 |  | |
UniProt | |||||
Find proteins for Q04QG8 (Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)) Explore Q04QG8 Go to UniProtKB: Q04QG8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q04QG8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | C [auth A], D [auth A], E [auth B], F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.200
- R-Value Work: 0.169
- R-Value Observed: 0.171
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/m36okh
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.88 | α = 90 |
| b = 101.12 | β = 90 |
| c = 108.66 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
| PARROT | phasing |
| ARP/wARP | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2019-05-08 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2019-05-08
Type: Initial release - Version 1.1: 2024-03-13
Changes: Data collection, Database references, Derived calculations
