6OK0

Crystal structure of Sel1 repeat protein from Oxalobacter formigenes

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.190 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Crystal structure of Sel1 repeat protein from Oxalobacter formigenes

Chang, C., Tesar, C., Endres, M., Babnigg, G., Hassan, H., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sel1 repeat protein151Oxalobacter formigenes OXCC13Mutation(s): 0 
Gene Names: OFBG_00636
EC: 3.5.2.6
UniProt
Find proteins for C3X8T2 (Oxalobacter formigenes OXCC13)
Explore C3X8T2 
Go to UniProtKB:  C3X8T2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC3X8T2
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Sel1 repeat protein151Oxalobacter formigenes OXCC13Mutation(s): 0 
Gene Names: OFBG_00636
EC: 3.5.2.6
UniProt
Find proteins for C3X8T2 (Oxalobacter formigenes OXCC13)
Explore C3X8T2 
Go to UniProtKB:  C3X8T2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC3X8T2
Sequence Annotations
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Sel1 repeat protein151Oxalobacter formigenes OXCC13Mutation(s): 0 
Gene Names: OFBG_00636
EC: 3.5.2.6
UniProt
Find proteins for C3X8T2 (Oxalobacter formigenes OXCC13)
Explore C3X8T2 
Go to UniProtKB:  C3X8T2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC3X8T2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Sel1 repeat protein151Oxalobacter formigenes OXCC13Mutation(s): 0 
Gene Names: OFBG_00636
EC: 3.5.2.6
UniProt
Find proteins for C3X8T2 (Oxalobacter formigenes OXCC13)
Explore C3X8T2 
Go to UniProtKB:  C3X8T2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC3X8T2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  3 Unique
IDChains TypeFormula2D DiagramParent
MLY
Query on MLY
A
L-PEPTIDE LINKINGC8 H18 N2 O2LYS
MLZ
Query on MLZ
A
L-PEPTIDE LINKINGC7 H16 N2 O2LYS
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.190 
  • Space Group: P 1
  • Diffraction Data: https://doi.org/10.18430/m36ok0
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.768α = 68.54
b = 68.587β = 79.25
c = 74.365γ = 89.97
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
PDB_EXTRACTdata extraction
HKL-3000phasing

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-04-15
    Type: Initial release