6O8J

Syn-safencin


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Synthetic Antimicrobial Peptide Tuning Permits Membrane Disruption and Interpeptide Synergy.

Fields, F.R.Manzo, G.Hind, C.K.Janardhanan, J.Foik, I.P.Carmo Silva, P.D.Balsara, R.D.Clifford, M.Vu, H.M.Ross, J.N.Kalwajtys, V.R.Gonzalez, A.J.Bui, T.T.Ploplis, V.A.Castellino, F.J.Siryaporn, A.Chang, M.Sutton, J.M.Mason, A.J.Lee, S.

(2020) Acs Pharmacol Transl Sci 3: 418-424

  • DOI: https://doi.org/10.1021/acsptsci.0c00001
  • Primary Citation of Related Structures:  
    6O8J, 6O8P, 6O8R, 6O8S, 6O8T

  • PubMed Abstract: 

    The ribosomally produced antimicrobial peptides of bacteria (bacteriocins) represent an unexplored source of membrane-active antibiotics. We designed a library of linear peptides from a circular bacteriocin and show that pore-formation dynamics in bacterial membranes are tunable via selective amino acid substitution. We observed antibacterial interpeptide synergy indicating that fundamentally altering interactions with the membrane enables synergy. Our findings suggest an approach for engineering pore-formation through rational peptide design and increasing the utility of novel antimicrobial peptides by exploiting synergy.


  • Organizational Affiliation

    Department of Biology, University of Notre Dame, Notre Dame, Indiana 46556, United States.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Circular bacteriocin, circularin A/uberolysin familyA [auth X]25Bacillus safensisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A1L6ZNG9 (Bacillus safensis)
Explore A0A1L6ZNG9 
Go to UniProtKB:  A0A1L6ZNG9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1L6ZNG9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2020-04-15
    Type: Initial release
  • Version 1.1: 2020-07-08
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Database references, Other