Download MendeleyHadesarchaea YNP_N21 cytochrome b5 domain protein (KUO41884.1)
Teakel, S.L., Marama, M.S., Aragao, D., Forwood, J.K., Cahill, M.A.To be published.
6NZX
Hadesarchaea YNP_N21 cytochrome b5 domain protein (KUO41884.1)
- PDB DOI: https://doi.org/10.2210/pdb6NZX/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Hadesarchaea archaeon YNP_N21
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-02-14 Released: 2019-03-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.261
- R-Value Work: 0.221
- R-Value Observed: 0.223
wwPDB Validation 3D Report Full Report
Currently 6NZX does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytochrome B5 | 78 | Hadesarchaea archaeon YNP_N21 | Mutation(s): 0 Gene Names: APU95_03975 |  | |
UniProt | |||||
Find proteins for A0A147JZ41 (Hadesarchaea archaeon YNP_N21) Explore A0A147JZ41 Go to UniProtKB: A0A147JZ41 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A147JZ41 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | B [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.261
- R-Value Work: 0.221
- R-Value Observed: 0.223
- Space Group: P 63
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.17 | α = 90 |
| b = 72.17 | β = 90 |
| c = 22.81 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
Structure Validation
Currently 6NZX does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2019-03-06 Deposition Author(s): Teakel, S.L., Marama, M.S., Aragao, D., Forwood, J.K., Cahill, M.A.
Revision History (Full details and data files)
- Version 1.0: 2019-03-06
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description
