Download MendeleyStructure and function of SbtB from Cyanobium sp. 7001
Jackson, C., Kaczmarski, J.A., Price, D.(2019) Biorxiv
6NTB
PII-like SbtB from Cyanobium sp PCC 7001 bound to ATP
- PDB DOI: https://doi.org/10.2210/pdb6NTB/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Cyanobium sp. PCC 7001
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-01-28 Released: 2019-09-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.227
- R-Value Work: 0.195
wwPDB Validation 3D Report Full Report
Currently 6NTB does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SbtB7001, PII-like protein | 104 | Cyanobium sp. PCC 7001 | Mutation(s): 0 Gene Names: CPCC7001_1671 |  | |
UniProt | |||||
Find proteins for B5II98 (Cyanobium sp. PCC 7001) Explore B5II98 Go to UniProtKB: B5II98 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B5II98 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP Query on ATP | D [auth A], F [auth B], G [auth C] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N |  | ||
| CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.227
- R-Value Work: 0.195
- Space Group: P 62
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 132.946 | α = 90 |
| b = 132.946 | β = 90 |
| c = 33.837 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Structure Validation
Currently 6NTB does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2019-09-18 Deposition Author(s): Kaczmarski, J.A., Jackson, C.J.
Revision History (Full details and data files)
- Version 1.0: 2019-09-18
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
