Download MendeleyCrystal structure of a histone family protein DNA-binding protein from Burkholderia ambifaria
Abendroth, J., Mayclin, S.J., Lorimer, D., Horanyi, P.S., Edwards, T.E.To be published.
6N2L
Crystal structure of a histone family protein DNA-binding protein from Burkholderia ambifaria
- PDB DOI: https://doi.org/10.2210/pdb6N2L/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Burkholderia ambifaria MC40-6
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2018-11-13 Released: 2018-12-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.295
- R-Value Work: 0.245
- R-Value Observed: 0.249
wwPDB Validation 3D Report Full Report
Currently 6N2L does not have a validation slider image.
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Histone family protein DNA-binding protein | 100 | Burkholderia ambifaria MC40-6 | Mutation(s): 0 Gene Names: BamMC406_0065 |  | |
UniProt | |||||
Find proteins for B1YQ53 (Burkholderia ambifaria (strain MC40-6)) Explore B1YQ53 Go to UniProtKB: B1YQ53 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B1YQ53 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.295
- R-Value Work: 0.245
- R-Value Observed: 0.249
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/m36n2l
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.21 | α = 90 |
| b = 71.4 | β = 90 |
| c = 76.73 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MoRDa | phasing |
| Coot | model building |
Structure Validation
Currently 6N2L does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2018-12-05 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2018-12-05
Type: Initial release - Version 1.1: 2018-12-19
Changes: Data collection, Refinement description - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description
